Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,751,950 – 3,752,057 |
Length | 107 |
Max. P | 0.542595 |
Location | 3,751,950 – 3,752,057 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 88.63 |
Mean single sequence MFE | -36.25 |
Consensus MFE | -25.50 |
Energy contribution | -26.25 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.23 |
Mean z-score | -1.58 |
Structure conservation index | 0.70 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3751950 107 - 22224390 CCACCAGCAACAUCCAGGCGGAGGUGUCCACCAGCAGCACCAAGUGAUGGUUGCUCAUCAGGCACACGCCCAUACACAGGUUAGCAACCAGCAGCCCGUGCUGCAGG ...((...........((.(((....))).)).(((((((...((..((((((((.(((.(((....)))........))).))))))))...))..))))))).)) ( -37.40) >DroSec_CAF1 5734 104 - 1 CCACCAGCAACAUCCAGGAGGAGGUGCCCACCAGCAGCACCAAGU---GGUUGCCCAUCAGGCACACCCCCACACGCAGGCUAGCCACCAGCAGCCCGUGCUGCAGG ...((.(((...(((....)))..)))......(((((((...((---((.((((.....)))).....)))).....((((.((.....)))))).))))))).)) ( -37.30) >DroSim_CAF1 5747 104 - 1 CCACCAGCAACAUCCAGGAGGAGGUGCCCACCAGCAGCACCAAGU---GGUUGCCCAUCAGGCACACCCCCACACGCAGGCUAGCCACCAGCAGCCCGUGCUGCAGG ...((.(((...(((....)))..)))......(((((((...((---((.((((.....)))).....)))).....((((.((.....)))))).))))))).)) ( -37.30) >DroYak_CAF1 5815 101 - 1 CCACCAGCAAAAUCCAGG---GGGCGCCCACCAGCAGCACCAAGU---GGUUGGCCAUCAGGCACUCACCCACGCACAGGUGAACCACCAGCAGCCCGUGUUGCAGG ...((...........((---((....)).)).(((((((...(.---((((((((....)))..(((((........)))))........))))))))))))).)) ( -33.00) >consensus CCACCAGCAACAUCCAGGAGGAGGUGCCCACCAGCAGCACCAAGU___GGUUGCCCAUCAGGCACACCCCCACACACAGGCUAGCCACCAGCAGCCCGUGCUGCAGG ...((.(((...(((....)))..)))......(((((((...((...(((((((.....))))...)))...))...((((.((.....)))))).))))))).)) (-25.50 = -26.25 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:16 2006