Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,740,114 – 3,740,213 |
Length | 99 |
Max. P | 0.850918 |
Location | 3,740,114 – 3,740,213 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 85.92 |
Mean single sequence MFE | -21.93 |
Consensus MFE | -15.74 |
Energy contribution | -16.37 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.08 |
Mean z-score | -2.08 |
Structure conservation index | 0.72 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3740114 99 - 22224390 ---GGAAAAACCGCAAUUGCAAUAUACAUACGACAUACAUAAUAUGUAUGUAGAAAUACAGGGCAAGGAAUUGCACUCUAUUUUGUUAUGUCGUAUUUGUGG ---.......((((((.(((.(((((......((((((((...)))))))).((((((.((.((((....)))).)).))))))..))))).))).)))))) ( -26.70) >DroSec_CAF1 13817 85 - 1 ---GGAAAAACCGCAAUUGCAAUAUACAUAC--------------AUAUGUAGAGAAACAGGGCAAGGAAUUGCACUCUAUUUUGUUAUGUCGUUUUUGUGG ---.......((((((..((.(((((...((--------------(...((((((.......((((....)))).))))))..)))))))).))..)))))) ( -20.90) >DroSim_CAF1 14781 88 - 1 ACAGGAAAAACCGCAAUUGCAAUAUACAUAC--------------AUAUGUAGAGAAACAGGGCAAGGAAUUGCACUCUAUUUUGUUAUGUCGUUUUUGUGG ..........((((((..((.(((((...((--------------(...((((((.......((((....)))).))))))..)))))))).))..)))))) ( -20.90) >DroYak_CAF1 13781 85 - 1 ---GGAAAAACCGCAAAUCCAAUAUGCAUAC--------------AUAUGUAGCGAUACAGGGCAAAGAAUUGCACUCUAUUUUGUUAUGUCGUUUUUGUGG ---.......(((((((..(.(((((....)--------------))))(((((((...(((((((....)))).).))...)))))))...)..))))))) ( -19.20) >consensus ___GGAAAAACCGCAAUUGCAAUAUACAUAC______________AUAUGUAGAGAAACAGGGCAAGGAAUUGCACUCUAUUUUGUUAUGUCGUUUUUGUGG ..........((((((..((....((((((................))))))((((((.((.((((....)))).)).))))))........))..)))))) (-15.74 = -16.37 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:01 2006