Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,737,320 – 3,737,415 |
Length | 95 |
Max. P | 0.613123 |
Location | 3,737,320 – 3,737,415 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 95.89 |
Mean single sequence MFE | -19.42 |
Consensus MFE | -17.30 |
Energy contribution | -17.50 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.23 |
Structure conservation index | 0.89 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3737320 95 + 22224390 UUGUAGGGAGCACCAGUUGGCUUUCUAUAACUAAAUCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAAGAACAAGUUAACCAUUAGUCAAAUG ((((((..(((........)))..))))))..........((((..((((((........))))))....))))..................... ( -19.20) >DroSec_CAF1 11080 95 + 1 UGGUAGGGAGCACCAGUUGGCUUUCUAUAACUAAAUCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAACAACAAGUUAACCAUUAGUCAAAUG ..((((..(((........)))..)))).(((((............((((((........)))))).((((.....))))....)))))...... ( -16.80) >DroSim_CAF1 12067 95 + 1 UGGUAGGGAGCACCAGUUGGCUUUCUAUAACUAAAUCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAAGAACAAGUUAACCAUUAGUCAAAUG ((((..((((....(((((........)))))....))))((((..((((((........))))))....))))......))))........... ( -19.30) >DroEre_CAF1 10842 94 + 1 GUGUAGGGAGCCCCAGUUGGCUUUCUAUAACUAAACCUCCGUUCGCGUAUCACACUCAAAUGAUAUCUAAGAACAAGUU-ACCAUUAGUCAAAUG .(((((..((((......))))..)))))...........((((..((((((........))))))....)))).....-............... ( -21.70) >DroYak_CAF1 11157 95 + 1 UUGUAGGGAGCUCCAGUUGGCUUUCUAUAACUAAACCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAAGAACAAGUUAACCAUUAGUCAAAUG ((((((..((((......))))..))))))..........((((..((((((........))))))....))))..................... ( -20.10) >consensus UUGUAGGGAGCACCAGUUGGCUUUCUAUAACUAAAUCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAAGAACAAGUUAACCAUUAGUCAAAUG ..((((..(((........)))..))))............((((..((((((........))))))....))))..................... (-17.30 = -17.50 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:59 2006