Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,701,710 – 3,701,829 |
Length | 119 |
Max. P | 0.573186 |
Location | 3,701,710 – 3,701,829 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.50 |
Mean single sequence MFE | -41.59 |
Consensus MFE | -26.04 |
Energy contribution | -26.93 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.27 |
Mean z-score | -1.71 |
Structure conservation index | 0.63 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3701710 119 + 22224390 UUCGGCCAAAGCCGUUGAGUGCAAUUUGUGCCGCAAGCGGCAUGUGAUCGCACCGGCGGUAUAUUGCACCAACUGCGAGUACUACCUGCAGAUGCUGAACCAGCGCAGAUGAUGAU-GAU .(((..((..(((((((.((((.((((((((((....))))))).))).)))))))))))...((((.....(((((.(.....).)))))..((((...)))))))).)).))).-... ( -41.70) >DroVir_CAF1 79926 119 + 1 CUCCGCGAAGGCUGUCGAAUGCAAUCUGUGCCGCAAGCGGCACGUGAUUGCGCCCGCCGUCUACUGCACCAACUGCGAGUACUAUCUGCAGAUGCUCAACCAGCGCAGAUGAUGAU-GAU ....((....))...((..((((((((((((((....))))))).)))))))..)).((((..((((.....((((((......)).))))..(((.....)))))))..))))..-... ( -43.70) >DroGri_CAF1 53841 119 + 1 CUCCGCAAAGGCCGUCGAGUGCAAUCUGUGCCGGAAACGGCACGUGAUUGCCCCCGCCGUCUACUGCACCAACUGUGAAUACUAUCUGCAGAUGCUGAACCAGCGCAGAUGAUGCU-AAU ....(((.((((.(.((.(.(((((((((((((....))))))).)))))).).))).)))).((((.....((((((......)).))))..((((...))))))))....))).-... ( -46.60) >DroWil_CAF1 41205 118 + 1 CUCGGCCAAGGCUGUGGAAUGUAAUCUAUGUCGCAAACGGCAUGUGAUAGCUCCGGCUGUCUAUUGCAAUAACUGUGAAUAUUAUUUGCAAAUGCUCAAUCAAAGGAGAUGAUAAA-GA- (.((((....)))).)...(((((...((((((((....(((...((((((....))))))...)))......)))).))))...)))))....(((........)))........-..- ( -28.20) >DroMoj_CAF1 52618 119 + 1 CUCGGCCAAGGCCGUCGAGUGCAAUCUGUGCCGCAAGCGCCACGUGAUUGCGCCCUCGAUCUACUGCACCAACUGCGAGUACUAUCUGCAGAUGCUAAACCAGCGCAGAUGAUGUCUGA- ..((((....))))((((((((((((((((.((....)).)))).))))))))..))))....((((.....((((((......)).))))..(((.....)))))))...........- ( -42.30) >DroAna_CAF1 36848 119 + 1 CUCGGCCAAGGCGGUGGAGUGCAAUCUGUGCCGCAAGAGGCAUGUGAUCGCGCCGGCCGUCUAUUGCACCAACUGCGAUUACUACCUACAGAUGCUGAAUCAGCGUCGGUGAUCCU-GAA .((((...(((((((.(.((((.(((((((((......)))))).))).))))).)))))))...(((.....)))(((((((.......(((((((...))))))))))))))))-)). ( -47.01) >consensus CUCGGCCAAGGCCGUCGAGUGCAAUCUGUGCCGCAAGCGGCACGUGAUUGCGCCCGCCGUCUACUGCACCAACUGCGAGUACUAUCUGCAGAUGCUGAACCAGCGCAGAUGAUGAU_GAU ....((..((((.((.(.((((.((((((((((....))))))).))).))))).)).))))...))...............(((((((....(((.....))))))))))......... (-26.04 = -26.93 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:47 2006