Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,672,336 – 3,672,432 |
Length | 96 |
Max. P | 0.553628 |
Location | 3,672,336 – 3,672,432 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 68.33 |
Mean single sequence MFE | -26.77 |
Consensus MFE | -14.51 |
Energy contribution | -16.65 |
Covariance contribution | 2.14 |
Combinations/Pair | 1.18 |
Mean z-score | -1.32 |
Structure conservation index | 0.54 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553628 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3672336 96 + 22224390 AGGUGGCUAAUUAAUAACGAAUUUGAGCU---------GGAAUUCGAAUUGGCCGCAGAAGGGGCGCUACCCUGUGACCCCAAUCAAAAACCCGAGCUUAUUAGG ..((((((((((.....(((((((.....---------.)))))))))))))))))....(((((((......))).)))).........((..(.....)..)) ( -29.80) >DroPse_CAF1 10060 73 + 1 UGGCCCCUAAUUAAUUACGAAUU---------------------CCA---CGUCACA-AGGGGGCGCGACCCUGCGACCUCAAUCC-------GAGCGUUUAAAG ..((((((........(((....---------------------...---)))....-.))))))(((....)))((((((.....-------))).)))..... ( -16.22) >DroSec_CAF1 6549 105 + 1 AGGUGGCUAAUUAAUAAAGAAUUUGAGCUUCGAGCUUCGAGCUUCGAAUUGGCCGCAGAAGGGGCGCUACCCUGUGACCCCAAUCAAAAACCUGAGCUUAUUAGG ..((((((((((......((((((((((.....)).))))).))).))))))))))....(((((((......))).)))).........(((((.....))))) ( -35.10) >DroEre_CAF1 10908 96 + 1 AGGCGGCUAAUUGAUUACGAUUCUGAGCU---------GGAAUUCGAAUUGGCCGCAGAAGGGGCGCUACCCUGUGACCCCAAUCGGCAGCCAGAGCUUAUCAAG .(((((((((((.....(((((((.....---------)))).)))))))))))((.((.(((((((......))).))))..)).)).)))............. ( -32.90) >DroYak_CAF1 6304 95 + 1 AGGUGGCUAAUUAAUUACGAAU-UGAACU---------GGAAUUCGUAUUGGCCGCAUAAGGGGCGCUACCCUGUGACCCCAAUCAGAAACCAGAGUUUAUCCAG ..((((((((.....(((((((-(.....---------..))))))))))))))))....(((((((......))).))))........................ ( -29.20) >DroPer_CAF1 11852 73 + 1 UGGCCCCUAAUUAAUUACGGAUU---------------------CCU---CGUCACA-AGGGGGCGCGACCCUGCGACCUCAAUUC-------GAGCGUUUAAAG ..((((((........((((...---------------------..)---)))....-.))))))(((....)))((((((.....-------))).)))..... ( -17.42) >consensus AGGCGGCUAAUUAAUUACGAAUUUGAGCU_________GGAAUUCGAAUUGGCCGCAGAAGGGGCGCUACCCUGUGACCCCAAUCA_AAACC_GAGCUUAUAAAG ..((((((((((..................................))))))))))....(((((((......))).))))........................ (-14.51 = -16.65 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:37 2006