Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,672,182 – 3,672,295 |
Length | 113 |
Max. P | 0.663146 |
Location | 3,672,182 – 3,672,295 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -30.12 |
Consensus MFE | -18.80 |
Energy contribution | -18.30 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.25 |
Mean z-score | -1.93 |
Structure conservation index | 0.62 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663146 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3672182 113 - 22224390 CUAAAGCCCAUUUUUAAGGU-UUGUAAUUU-UUUCGUACCCCAGAAAGCGCUUCUUGCGCUUAGGUGGGGCAAAAACUUUGAAGGCCUGAGAAUAGAUCAAAAACUUUGAAUCAA .........(((((((.(((-((.(((..(-(((....(((((..((((((.....))))))...)))))..))))..))).)))))))))))).((((((.....))).))).. ( -28.30) >DroSec_CAF1 6395 113 - 1 CUAAAGCCCAUUUUUAAGGU-UUGUAAUUU-UUUCGUACCCCAUAAAGCGCUUCUUGCGCUUAGGUGGGGCAAAAUCUUUGAAGGCCUGAGAAUAGAUCAAAAACUUUGAAUCAA ............((((((((-((...((((-.(((...((((((.((((((.....))))))..))))))(((.....))).........))).))))...)))))))))).... ( -29.70) >DroEre_CAF1 10755 112 - 1 ACAAGGCCCAUUCCUAAGGU-UUGUGAUAU-UUUCGCAC-CCGUAAGGCGCUUCUUGCGCUUAGGUGGGGCAAAAUCAUUGAAGGUCUGAGAAUAAAUCAAGAACUUUGAUUCAG .....((((...((((((..-.(((((...-..))))).-.(((((((....)))))))))))))..))))......((..(((.(((((.......)).))).)))..)).... ( -33.80) >DroYak_CAF1 6157 106 - 1 CCAAAGCCCAUUCUUAAGGUUUUGUGAUUUUUUUCGUACCCCGUAAAGCGCUUCUUGCGUUUAGGUGGGGCCAAAUCAUUGGAGGUCAGAGAAGAAAUAAAAAA---------AA .(((((((.........)))))))...((((((((...(((((..((((((.....))))))...)))))((((....))))......))))))))........---------.. ( -28.70) >consensus CCAAAGCCCAUUCUUAAGGU_UUGUAAUUU_UUUCGUACCCCAUAAAGCGCUUCUUGCGCUUAGGUGGGGCAAAAUCAUUGAAGGCCUGAGAAUAAAUCAAAAACUUUGAAUCAA .....((((...(((..((...(((((......)))))..))...((((((.....)))))))))..))))............................................ (-18.80 = -18.30 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:36 2006