Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 492,868 – 493,013 |
Length | 145 |
Max. P | 0.999396 |
Location | 492,868 – 492,974 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 96.60 |
Mean single sequence MFE | -35.62 |
Consensus MFE | -34.90 |
Energy contribution | -34.90 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.98 |
SVM decision value | 3.04 |
SVM RNA-class probability | 0.998215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 492868 106 + 22224390 ACGGGGCCCUCAGGCAGAGAAAGAGGGCGAAAGCAAGCUACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCACAUAUAUAUAAAUCUGUACAUACAUAU (((((((((((...........))))))........((.....(((((((((.((....)).))))))))).....)).............))))).......... ( -36.50) >DroSec_CAF1 5745 104 + 1 ACGGGGCCCUCAGGCAGAGAAA--GGGCGAAAGCAAGCUACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCAUAUAUAUAUAAAUCUGUACAUACAUAU ((((((((....))).(((...--..((....)).........(((((((((.((....)).)))))))))))).................))))).......... ( -35.30) >DroSim_CAF1 5631 104 + 1 ACGGGGCCCUCAGGCAGAGAAA--GGGCGAAAGCAAGCUACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCAUAUAUAUAUAAAUCUGUACAUACAUAU ((((((((....))).(((...--..((....)).........(((((((((.((....)).)))))))))))).................))))).......... ( -35.30) >DroEre_CAF1 6439 106 + 1 ACGGGGCCCGCAGGCAGAGAGAGAGGGCGAGAGCAAGCUACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCACAUAUAUAUAAAUCUGUACAUACAUAU ((((((((....)))...(((((...((....))...))....(((((((((.((....)).)))))))))))).................))))).......... ( -35.50) >DroYak_CAF1 5895 106 + 1 ACGGGGCCCGCAGGCAGAGAGAGAGGGCGAGAGCAAGCUACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCACAUAUAUAUAAAUCUGUACAUACAUAU ((((((((....)))...(((((...((....))...))....(((((((((.((....)).)))))))))))).................))))).......... ( -35.50) >consensus ACGGGGCCCUCAGGCAGAGAAAGAGGGCGAAAGCAAGCUACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCACAUAUAUAUAAAUCUGUACAUACAUAU ((((((((....))).(((.......((....)).........(((((((((.((....)).)))))))))))).................))))).......... (-34.90 = -34.90 + -0.00)
Location | 492,868 – 492,974 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 96.60 |
Mean single sequence MFE | -35.12 |
Consensus MFE | -32.86 |
Energy contribution | -32.38 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.06 |
Mean z-score | -1.92 |
Structure conservation index | 0.94 |
SVM decision value | 2.69 |
SVM RNA-class probability | 0.996392 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 492868 106 - 22224390 AUAUGUAUGUACAGAUUUAUAUAUAUGUGCGUGAGGCAAGCGCGCGCUCUCGCUCGCACCCGCUUGUAGCUUGCUUUCGCCCUCUUUCUCUGCCUGAGGGCCCCGU (((((((((((......)))))))))))(((.((((((((((((.((....)).)))((......)).))))))))).((((((...........))))))..))) ( -37.00) >DroSec_CAF1 5745 104 - 1 AUAUGUAUGUACAGAUUUAUAUAUAUAUGCGUGAGGCAAGCGCGCGCUCUCGCUCGCACCCGCUUGUAGCUUGCUUUCGCCC--UUUCUCUGCCUGAGGGCCCCGU (((((((((((......)))))))))))(((.((((((((((((.((....)).)))((......)).))))))))).((((--((.........))))))..))) ( -34.90) >DroSim_CAF1 5631 104 - 1 AUAUGUAUGUACAGAUUUAUAUAUAUAUGCGUGAGGCAAGCGCGCGCUCUCGCUCGCACCCGCUUGUAGCUUGCUUUCGCCC--UUUCUCUGCCUGAGGGCCCCGU (((((((((((......)))))))))))(((.((((((((((((.((....)).)))((......)).))))))))).((((--((.........))))))..))) ( -34.90) >DroEre_CAF1 6439 106 - 1 AUAUGUAUGUACAGAUUUAUAUAUAUGUGCGUGAGGCAAGCGCGCGCUCUCGCUCGCACCCGCUUGUAGCUUGCUCUCGCCCUCUCUCUCUGCCUGCGGGCCCCGU (((((((((((......)))))))))))(((.((((((((((((.((....)).)))((......)).)))))).)))((((.(...........).))))..))) ( -34.40) >DroYak_CAF1 5895 106 - 1 AUAUGUAUGUACAGAUUUAUAUAUAUGUGCGUGAGGCAAGCGCGCGCUCUCGCUCGCACCCGCUUGUAGCUUGCUCUCGCCCUCUCUCUCUGCCUGCGGGCCCCGU (((((((((((......)))))))))))(((.((((((((((((.((....)).)))((......)).)))))).)))((((.(...........).))))..))) ( -34.40) >consensus AUAUGUAUGUACAGAUUUAUAUAUAUGUGCGUGAGGCAAGCGCGCGCUCUCGCUCGCACCCGCUUGUAGCUUGCUUUCGCCCUCUUUCUCUGCCUGAGGGCCCCGU (((((((((((......)))))))))))..((((((((((((((.((....)).)))((......)).)))))).)))))...........(((....)))..... (-32.86 = -32.38 + -0.48)
Location | 492,907 – 493,013 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 95.46 |
Mean single sequence MFE | -27.60 |
Consensus MFE | -25.56 |
Energy contribution | -25.32 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.24 |
Structure conservation index | 0.93 |
SVM decision value | 3.57 |
SVM RNA-class probability | 0.999396 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 492907 106 + 22224390 ACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCACAUAUAUAUAAAUCUGUACAUACAUAUAGUAUCAGAAGAAAAAACUAAAGCCGCUAUUCGAUUUAC ...((((((((((.((....)).))))).(((.....)))............(((((((.........))).))))..............)))))........... ( -26.40) >DroSec_CAF1 5782 104 + 1 ACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCAUAUAUAUAUAAAUCUGUACAUACAUAUAGUAUCAGAA-AAAAGACUAAAGCCGCUAU-CGAUUUAC ...((((((((((.((....)).))))).(((.....)))............(((((((.........))).)))).-............)))))..-........ ( -26.50) >DroSim_CAF1 5668 105 + 1 ACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCAUAUAUAUAUAAAUCUGUACAUACAUAUAGUAUCAGAA-AAAAGACUAAAGCCGCUAUUCGAAUAAC ...((((((((((.((....)).))))).(((.....)))............(((((((.........))).)))).-............)))))........... ( -26.50) >DroEre_CAF1 6478 104 + 1 ACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCACAUAUAUAUAAAUCUGUACAUACAUAUAGUAUCAGAAAAAAAGACUAAAGUCGCUAUUCGAUUU-- ....(((((((((.((....)).))))))))).....((.............(((((((.........))).))))......(((....)))))..........-- ( -29.30) >DroYak_CAF1 5934 104 + 1 ACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCACAUAUAUAUAAAUCUGUACAUACAUAUAGUAUCAGAAAAAAAGACUAAAGUCGCUAUUCGAUUU-- ....(((((((((.((....)).))))))))).....((.............(((((((.........))).))))......(((....)))))..........-- ( -29.30) >consensus ACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCACAUAUAUAUAAAUCUGUACAUACAUAUAGUAUCAGAA_AAAAGACUAAAGCCGCUAUUCGAUUUAC ...((((((((((.((....)).))))).(((.....)))............(((((((.........))).))))..............)))))........... (-25.56 = -25.32 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:48 2006