Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,584,335 – 3,584,455 |
Length | 120 |
Max. P | 0.942414 |
Location | 3,584,335 – 3,584,455 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.08 |
Mean single sequence MFE | -30.64 |
Consensus MFE | -25.07 |
Energy contribution | -26.00 |
Covariance contribution | 0.93 |
Combinations/Pair | 1.10 |
Mean z-score | -1.93 |
Structure conservation index | 0.82 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942414 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3584335 120 - 22224390 GCGGUGAACUCUUUGUGCCCAGAUUUACAGGCACGUCUCAUCGCUAUCGUAUCUUUCUGUGGUCCUUUCAUUGGAAAGUGCCAAGUGCCUGUCUCUAUCUGCAACUGCAAUUUUCCUCCC (((((..((.....))...(((((..((((((((........((....)).........(((..(((((....)))))..))).))))))))....)))))..)))))............ ( -33.90) >DroSec_CAF1 43205 120 - 1 GCGGUGAACUCUUUGUGCCCAGAUUUACAGGCACGUCUCAUCGCUAUCCUAUCUUUCCGUGGUCCUUUCAUUGGAAAGUGCCAAGUGCCUGUCUCUAUCUGCAACUGCAGUUUUCCUCCC ..((.((((((...((...(((((..((((((((((......))...............(((..(((((....)))))..))).))))))))....)))))..)).).))))).)).... ( -35.10) >DroSim_CAF1 29991 120 - 1 GCGGUGAACUCUUUGUGCCCAGAUUUACAGGCACGUCUCAUCGCUAUCCUAUCUUUCCGUGGUCCUUUCAUUGGAAAGUGCCAAGUGCCUGUCUCUAUCUGCAACUGCAGUUUUCCUCCC ..((.((((((...((...(((((..((((((((((......))...............(((..(((((....)))))..))).))))))))....)))))..)).).))))).)).... ( -35.10) >DroEre_CAF1 37996 105 - 1 G--------------UGCCCAGAUUUACAGGCAUGUCUCUUCGCUAUCCCAUCUUUCCGUGCUCCUUUCAUAGGAAAGUGCCAAGUGUCUGUCUCUAUCUGCAACUGCAGU-UUCCUCCC .--------------(((.(((((..((((((((((......)).....((.(((((((((.......))).))))))))....))))))))....))))).....)))..-........ ( -20.70) >DroYak_CAF1 39022 119 - 1 GUGGUGAACUCUUUGUGCCCAGAUUUACAGGCAUGUCUUUUCGCUAUCCCAUCUUUCCGUGCUCCUUUCAUAGGAAAGUGCCAAGUGCCUGUUUCUAUCUGCAACUGCAGU-UUCCUCCC ..((.((((((...((...(((((..((((((((((......)).....((.(((((((((.......))).))))))))....))))))))....)))))..)).).)))-)))).... ( -28.40) >consensus GCGGUGAACUCUUUGUGCCCAGAUUUACAGGCACGUCUCAUCGCUAUCCUAUCUUUCCGUGGUCCUUUCAUUGGAAAGUGCCAAGUGCCUGUCUCUAUCUGCAACUGCAGUUUUCCUCCC (((((..((.....))...(((((..((((((((((......))...............((((.(((((....))))).)))).))))))))....)))))..)))))............ (-25.07 = -26.00 + 0.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:51 2006