Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,556,802 – 3,556,893 |
Length | 91 |
Max. P | 0.723682 |
Location | 3,556,802 – 3,556,893 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 90.72 |
Mean single sequence MFE | -20.60 |
Consensus MFE | -15.54 |
Energy contribution | -15.38 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -1.83 |
Structure conservation index | 0.75 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.723682 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3556802 91 + 22224390 CGUUUUUAUUUGCUCACUGCGUCGUCAUCGAUUGCAAUAAAUUGAGGAAUUGAAUACGGACGCAUUGAGGGAAUAUAUAUGUUUUCCAUAA (((...(((((.((((.((((((((..((((((.(..........).))))))..)).)))))).)))).)))))...))).......... ( -25.20) >DroSec_CAF1 12465 83 + 1 CGUUUUUAUUUGCUCACUGCG---UCAUCGAUUGCAGUAAAUUGAGGAAUUGAAUACG-ACGCAUUGGGGGAAUAUA----UUCUCCAUAA (((.((((.((.(((((((((---........)))))).....))).)).)))).)))-......(((((((.....----)))))))... ( -21.60) >DroSim_CAF1 10536 83 + 1 CGUUUUUAUUUGCUCACUGCG---UCAUCGAUUGCAGUAAAUUGAGGAAUUGAAUACG-ACGCAUUGGGGGAAUAUA----UUCUCCAUAA (((.((((.((.(((((((((---........)))))).....))).)).)))).)))-......(((((((.....----)))))))... ( -21.60) >DroEre_CAF1 12617 83 + 1 AGUUUUUAUGUGCUUACUGCG---UCAUCGAUUGCAAUAAAUUGGGGAAUUGAAUACG-ACGAAUUGAGGGAAUAUA----UUCUCCAUAA ............((((...((---((.((((((.(..........).))))))....)-)))...))))(((.....----...))).... ( -12.60) >DroYak_CAF1 14031 83 + 1 CGUUUUUAUUUGCUCACUGCG---UCAUCGAUUGCAAUAAAUUGAGGAAUUGAAUACG-ACGCAAUGAGGAAAUAUA----UUCUACAUAA ......(((((.((((.((((---((.((((((.(..........).))))))....)-))))).)))).)))))..----.......... ( -22.00) >consensus CGUUUUUAUUUGCUCACUGCG___UCAUCGAUUGCAAUAAAUUGAGGAAUUGAAUACG_ACGCAUUGAGGGAAUAUA____UUCUCCAUAA ......(((((.((((.((((......((((((.(..........).)))))).......)))).)))).)))))................ (-15.54 = -15.38 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:29 2006