Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,540,210 – 3,540,362 |
Length | 152 |
Max. P | 0.931179 |
Location | 3,540,210 – 3,540,322 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.04 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -11.12 |
Energy contribution | -10.40 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.35 |
Mean z-score | -1.81 |
Structure conservation index | 0.47 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3540210 112 - 22224390 UUCUAUGUGGGAAUAACUCUUUAUCUAUAUUUGUGUGUAUG--------UAUGCAUGUAUACAAGUUUAUUAAAGGUUAUCGCCUGCAAUCGAGCAUUUGGCUACACCUUGCUAUUAUAA .....((..((.(((((.(((((.....(((((((((((((--------....)))))))))))))....))))))))))..))..))....((((...((.....)).))))....... ( -30.40) >DroSec_CAF1 48306 111 - 1 UUCUAUGG-GCAAGAACUCUUUAUCUAUAUUUGUGUGUAUG--------UAUGCAUGUACACAAGUUUAUUAAGGGUUAUCGCCUGCGAUCGACCAUUUGACUACUCCUUCCUUUUAUAA ......((-((...(((((((.......(((((((((((((--------....))))))))))))).....)))))))...))))................................... ( -25.60) >DroSim_CAF1 49858 111 - 1 UUCUAUGU-GAAAGAACUCUUUAUCUAUAUUUGUGUGUAUG--------UAUGCAUGUACACAAGUUUAUUAAGGGUUAUCGCCUGCGAUCGACCAUUUGACUACACCUUCCUUCUAUAA ...((((.-(((.(((.........((.(((((((((((((--------....))))))))))))).))(((((((((((((....)))).)))).))))).......))).))))))). ( -24.20) >DroEre_CAF1 52443 87 - 1 ----------------------GUCUAUAUAUGCAUAUG----------UAC-UAUGUACACGAGUUUAUUGGAGGUUAUCGCCUGCGAUCGACCAUUUGGCUACCCCUAACCACUAUAA ----------------------((.(((((((((....)----------)).-)))))).))(.(((.((((.((((....)))).)))).))))...(((.((....)).)))...... ( -16.20) >DroYak_CAF1 48212 119 - 1 UUCUAUGU-AAAAUUACUCUAUAUCUAUAUAUGUAUGUGUGUAAAAAUGUACAUAUGUGCACAAAUUUAUUAGAGGUUAUCGCCUGCGAUCGACCAUUUGGCUACACUUUCCUAUUAUUA .....(((-(.......((((..........((((((((((((......)))))))))))).........))))((((((((....)))).)))).......)))).............. ( -23.11) >consensus UUCUAUGU_GAAAGAACUCUUUAUCUAUAUUUGUGUGUAUG________UAUGCAUGUACACAAGUUUAUUAAAGGUUAUCGCCUGCGAUCGACCAUUUGGCUACACCUUCCUAUUAUAA ..................................(((((((........)))))))(((..(((((........((((((((....)))).)))))))))..)))............... (-11.12 = -10.40 + -0.72)
Location | 3,540,250 – 3,540,362 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.63 |
Mean single sequence MFE | -27.04 |
Consensus MFE | -13.62 |
Energy contribution | -13.75 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.23 |
Mean z-score | -2.65 |
Structure conservation index | 0.50 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931179 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3540250 112 - 22224390 AAUGACGAUUAGUUUACUUUCCAUAGGUGUCUGGUUCGUCUUCUAUGUGGGAAUAACUCUUUAUCUAUAUUUGUGUGUAUG--------UAUGCAUGUAUACAAGUUUAUUAAAGGUUAU ...(((((((((..(((((.....))))).)))).)))))((((....))))(((((.(((((.....(((((((((((((--------....)))))))))))))....)))))))))) ( -28.30) >DroSec_CAF1 48346 102 - 1 ---------UAGUUUACAUUCCAUAGGUGUCUGGUUCGUGUUCUAUGG-GCAAGAACUCUUUAUCUAUAUUUGUGUGUAUG--------UAUGCAUGUACACAAGUUUAUUAAGGGUUAU ---------..........((((((((((...(((((.((((.....)-))).)))))...)))))))(((((((((((((--------....))))))))))))).......))).... ( -28.10) >DroSim_CAF1 49898 102 - 1 ---------UAGUUUACAUUCCUUAGGUGUCUGGUUCGUGUUCUAUGU-GAAAGAACUCUUUAUCUAUAUUUGUGUGUAUG--------UAUGCAUGUACACAAGUUUAUUAAGGGUUAU ---------..........((((((((((...(((((...(((.....-))).)))))...))))((.(((((((((((((--------....))))))))))))).)).)))))).... ( -26.00) >DroYak_CAF1 48252 119 - 1 AAUGUCUAUAAGCUUGCAUACCAUAGGUGUCUGUAAUGUGUUCUAUGU-AAAAUUACUCUAUAUCUAUAUAUGUAUGUGUGUAAAAAUGUACAUAUGUGCACAAAUUUAUUAGAGGUUAU (((.((((((((.(((......((((((((..(((((...........-...)))))...))))))))...((((((((((((......))))))))))))))).)))).)))).))).. ( -25.74) >consensus _________UAGUUUACAUUCCAUAGGUGUCUGGUUCGUGUUCUAUGU_GAAAGAACUCUUUAUCUAUAUUUGUGUGUAUG________UAUGCAUGUACACAAGUUUAUUAAAGGUUAU .....................((((((...(......)...)))))).......(((.(((((.....((((((((..(((............)))..))))))))....)))))))).. (-13.62 = -13.75 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:26 2006