Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,537,064 – 3,537,179 |
Length | 115 |
Max. P | 0.612915 |
Location | 3,537,064 – 3,537,179 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.00 |
Mean single sequence MFE | -29.77 |
Consensus MFE | -20.24 |
Energy contribution | -19.05 |
Covariance contribution | -1.19 |
Combinations/Pair | 1.22 |
Mean z-score | -1.66 |
Structure conservation index | 0.68 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3537064 115 - 22224390 ACUCAAGUA-----GAACUAUUGUAAUCUAUUCCCAGCGUCAAUUGCUUUUGUUUAGCGCGGGUGACAUUGCUCAUUGUCAACUGAGACAAGAGCAAAAACAAGAGCAGUGAAGAGAGCG .(((.((((-----((((....))..)))))).......(((.((((((((((((......(....).((((((.(((((......)))))))))))))))))))))))))).))).... ( -36.50) >DroSec_CAF1 45225 114 - 1 ACUCAAUUA-----GAACUAUUGUAAUCUAUUCCCAGCGUCAAUUG-UUUGGUUUAGCGCGGGUGACAUUGCUCAUUGUCAACUGAGACAAGAGCAAAAACAAGAGCCGUGGAGAGAGCG .(((.....-----.............(((..((.((((.....))-)).))..)))(((((.((...((((((.(((((......)))))))))))...))....)))))..))).... ( -30.00) >DroSim_CAF1 46777 112 - 1 ACUCAAAUA-----GAACUAUUGUAAUAUAUAUUAA--GUCAAUUG-UUUGGUUUAGCGCGGGUGACAUUGCUCAUUGUCAACUGAGACAAGAGCAAAAACAAGAGCCGUGGAGAGAGCG .(((((((.-----((((.((((...((.....)).--..)))).)-))).))))..(((((.((...((((((.(((((......)))))))))))...))....)))))..))).... ( -28.10) >DroEre_CAF1 49516 110 - 1 ACUCAACUAUUUAUGUAGCAUUAUAAGCUAUUCU--------AUUG-UUUUGUUGUGCGG-GGUGACAUUGCUUAUUGUCAACUAAGGUAAGAGCAAAAACAACAGCAGUGAAGAGAGCG .(((..........(((((.......)))))..(--------((((-(..((((((....-(....).((((((.((..(......)..))))))))..))))))))))))..))).... ( -24.50) >consensus ACUCAAAUA_____GAACUAUUGUAAUCUAUUCCCA__GUCAAUUG_UUUGGUUUAGCGCGGGUGACAUUGCUCAUUGUCAACUGAGACAAGAGCAAAAACAAGAGCAGUGAAGAGAGCG .(((............((....)).........................((((((......(....).((((((.(((((......)))))))))))......))))))....))).... (-20.24 = -19.05 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:22 2006