Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,499,620 – 3,499,721 |
Length | 101 |
Max. P | 0.999868 |
Location | 3,499,620 – 3,499,721 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 91.10 |
Mean single sequence MFE | -19.51 |
Consensus MFE | -17.50 |
Energy contribution | -18.30 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.87 |
Structure conservation index | 0.90 |
SVM decision value | 4.31 |
SVM RNA-class probability | 0.999868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3499620 101 + 22224390 GA---UAUCCUAUCAUUUACUUACGCCAUUUGGCAAUUUCAUGCAAAUACUUAUGCCAAAACGGCAAAAAUUUGCUACCAAUCUGUUGCCAAAAACUAUUCAGC ((---((...))))..............(((((((((.....((((((..((.((((.....)))).)))))))).........)))))))))........... ( -20.24) >DroSec_CAF1 8256 101 + 1 GA---UGCCCUAUCAUUUACUUACCCCAUUUGGCAAUUUCAUGCAAAUACUUAUGCCAAAACGGCAAAAAUUUGCUACCAAUCUGUUGCCAAAAACUAUUCAGC ..---.......................(((((((((.....((((((..((.((((.....)))).)))))))).........)))))))))........... ( -19.94) >DroSim_CAF1 8712 101 + 1 GA---UGCCCUAUCAUUUACUUAACCCAUUUGGCAAUUUCAUGCAAAUACUUAUGCCAAAACGGCAAAAAUUUGCUACCAAUCUGUUGCCAAAAACUAUUCAGC ..---.......................(((((((((.....((((((..((.((((.....)))).)))))))).........)))))))))........... ( -19.94) >DroEre_CAF1 10603 104 + 1 GCUGAUGCCCCAUUAUUUAUUUGCCCUAUUUGGCAAUUUCAUGCAAAUACUUAUGCCAAAAUGGCAAAAAUUUGCUACCAAUCUGUUGCCAAAAACUAUUCAGC (((((.((..............))....(((((((((.....((((((..((.((((.....)))).)))))))).........)))))))))......))))) ( -24.08) >DroYak_CAF1 5638 97 + 1 GU---UGUCCCAUCAUUUUCUUACCCUA----GCAAUUUCAUGCAAAUACGUAUGCCAAAAUGGCAAAAAUUUGCUACCAAUCUGUUGCCAAAAACUAUUCAGC ..---.......................----(((((.....((((((...(.((((.....)))).).)))))).........)))))............... ( -13.34) >consensus GA___UGCCCUAUCAUUUACUUACCCCAUUUGGCAAUUUCAUGCAAAUACUUAUGCCAAAACGGCAAAAAUUUGCUACCAAUCUGUUGCCAAAAACUAUUCAGC ............................(((((((((.....((((((.....((((.....))))...)))))).........)))))))))........... (-17.50 = -18.30 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:04 2006