Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,496,531 – 3,496,628 |
Length | 97 |
Max. P | 0.631926 |
Location | 3,496,531 – 3,496,628 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 76.93 |
Mean single sequence MFE | -24.20 |
Consensus MFE | -10.20 |
Energy contribution | -10.53 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.33 |
Mean z-score | -2.16 |
Structure conservation index | 0.42 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631926 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3496531 97 - 22224390 AUAUGUGUUGACAAGAGUGCGCCACAAGUGUGUGCGAACGAUGGAGACAU---------AGAAGGGUCGAAAAGGGCCUAAAAAUGGGGGUCGAAACGGGG-----GGGGG ...(((.(((((....((.((((((....))).))).)).(((....)))---------....(((((......)))))..........))))).)))...-----..... ( -25.00) >DroSec_CAF1 5241 93 - 1 AUAUGUGUUGACAAGAGUGCGCCACAAGUGUGUGCGAACGAUGAAGACAU---------AGAAGGGUCGAAAAGGGCCUAAAAA-GGGGGCCGAAAUGGG------GGG-- ...((((((..((...((.((((((....))).))).))..))..)))))---------)..............(((((.....-..)))))........------...-- ( -23.10) >DroSim_CAF1 5280 94 - 1 AUAUGUGUUGACAAGAGUGCGCCACAAGUGUGUGCGAACGAUGAAGACAU---------AGAAGGGUCGAAAAGGGCCUAAAAA-GGGGGCCGAAAUGGGG-----GGG-- ...((((((..((...((.((((((....))).))).))..))..)))))---------)..............(((((.....-..))))).........-----...-- ( -23.10) >DroEre_CAF1 5625 95 - 1 AUAUGUGUUGACAAGAGUGCGCCACAAGUGU--GCGAAUAAUGGAAACGU---------CGAAGGGUCGAAAAGGGCCUAAAAA-GGGGGG--AAAGAGGGCAUAAGGG-- .(((((.(((((....(..(((.....))).--.).......(....)))---------))).(((((......))))).....-......--.......)))))....-- ( -22.50) >DroYak_CAF1 2423 89 - 1 AUAUGUGUUGACAAGAGUGCGCCACAAGUGU--GUGAAUGAUGAAGACGU---------CGAAAGGUCGAAAAGCCCCUAAAAA-GGGGGG--UAAG------UAAGGG-- .......(((((....(..(((.....))).--.)...(((((....)))---------))....)))))...((((((.....-.)))))--)...------......-- ( -21.10) >DroAna_CAF1 8553 97 - 1 AUAUGUGUUGACAAGAGGGCGCCACAAGUGUCUAAGGACGAUGGAGACAUCAUCGCUAUCGAAGGAUAUGUCAGGGUCUA------GGGGUCGCACAAGG------GAG-- ...(((((.(((....((((((.....))))))..((((((((....))))...((((((....)))).))....)))).------...))))))))...------...-- ( -30.40) >consensus AUAUGUGUUGACAAGAGUGCGCCACAAGUGUGUGCGAACGAUGAAGACAU_________AGAAGGGUCGAAAAGGGCCUAAAAA_GGGGGCCGAAAGGGG______GGG__ .......(((((.....(((((.....)))))........(((....)))...............)))))....(((((........)))))................... (-10.20 = -10.53 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:01 2006