Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,488,593 – 3,488,709 |
Length | 116 |
Max. P | 0.887701 |
Location | 3,488,593 – 3,488,709 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 74.45 |
Mean single sequence MFE | -27.02 |
Consensus MFE | -12.22 |
Energy contribution | -12.42 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.12 |
Mean z-score | -2.01 |
Structure conservation index | 0.45 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3488593 116 + 22224390 AAGAUAUUAAUUACCUUAAUAUUACUCUUUAAGGAACUGCAGCAUUAAUUUUGACUUACGCUGCU-CUUAUAAUUUUGUUCACAGUGUAGUAAUUGCAUUGCGCUGCGAUUAUUGCA ..((....(((((((((((.........))))))....(((((................))))).-....)))))....))....(((((((((((((......))))))))))))) ( -27.09) >DroSec_CAF1 49158 110 + 1 AAAAUA------AUGUUAAUAUCACUCUUUAAGGAACUACAGAAUUAAUUUUGACUCACUCUGGU-CGUAUAGUUUUGUUCUCAGUGUAGUAAUUGCAUUGCGCUGCGAUUAUUGCA ......------.....................((...(((((((((....(((((......)))-))..)))))))))..))..(((((((((((((......))))))))))))) ( -24.20) >DroSim_CAF1 43580 108 + 1 --AGCA------AUGUUAAUAUCACUUUUUAAGGAACUACAGAAUUAAUUUUGACUCACGCUGGU-CGUAUAGUUUUGUUCUCAGUGUAGUAAUUGCAUUGCGCUGCGAUUAUUGCA --.(((------(((.......................(((((((((....(((((......)))-))..)))))))))((.(((((((((......))))))))).)).)))))). ( -26.50) >DroEre_CAF1 52152 109 + 1 AAGAAA------AUAUUA-CAUUGGGUCUUAAGGAACUACACU-GUAGUUCAGAGUCUCGCUCGCUUGCCAAUUUUUGUUUUCAGUGCAGUAAUUGCAUUGUGUUGCGAUAAAUGCA ..((((------(((...-.(((((........(((((((...-))))))).(((.....))).....)))))...)))))))..((((...((((((......))))))...)))) ( -30.40) >DroYak_CAF1 51048 109 + 1 CAGAAA------AUAUUAACCCUAGGCUUUGAGGAACUGCACU-GUAGUUUUCAGUCACGCUGAU-UUUCAAAUGUUGUUUUCAGUGUAGUAAUUGCAUUGUGUUGCGAUUAUUGGU ......------......(((...((((..(((.((((((...-)))))))))))))(((((((.-...((.....))...)))))))((((((((((......))))))))))))) ( -26.90) >consensus AAGAAA______AUAUUAAUAUUACUCUUUAAGGAACUACAGAAUUAAUUUUGACUCACGCUGGU_CGUAUAAUUUUGUUCUCAGUGUAGUAAUUGCAUUGCGCUGCGAUUAUUGCA .................................((((........................................)))).....((((((((((((......)))))))))))). (-12.22 = -12.42 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:57 2006