| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,453,449 – 3,453,540 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 3,453,449 – 3,453,540 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 81.38 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -13.98 |
| Energy contribution | -15.65 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3453449 91 - 22224390 CUGAACCCUUUGUUGCCACAGGACGAAAGCUAAUUAAAGCG--AAGCCCUGGCUUCAUGAAAGAAAAACACAGGCAAAGGACCAACAUGAUGA ......((((((((..............(((......)))(--((((....)))))................))))))))............. ( -20.20) >DroSec_CAF1 25512 91 - 1 CUGAACCCUUUGUUGCCAGAGGACGAAAGCUAAUUAAAGCU--AGGCCCUGGCUUCAUGAAAGAAAAACACAGGCAAAGGCCCAACAUGUUGA ......(((((((((((((.((.(...((((......))))--.).)))))))(((......))).......))))))))..(((....))). ( -23.90) >DroSim_CAF1 25195 91 - 1 CUGAACCCUUUGUUGCCAGAGGACGAAAGCUAAUUAAAGCG--AGGCCCUGGCUUCAUGAAAGAAAAACACAGGCAAAGGCCCAACAUGUUGA ......(((((((((((((.((.(....(((......))).--.).)))))))(((......))).......))))))))..(((....))). ( -23.30) >DroEre_CAF1 28840 91 - 1 CUGAACCCUUUGUUGCCAGAGGAGGAAAGCUAAUUAAAGCG--AGGCCCUGGCUGUAUAAAAGAAAAACACAGGCAAUGGGCCGACAUGAUGA ......((((((....))))))......(((......))).--.(((((((.((((.............)))).))..))))).......... ( -24.72) >DroYak_CAF1 26851 91 - 1 CUGAACCCUUUGUUGCCAGAGGAGAAAAGCUAAUUAAAGCG--AGGCCCUGGCUUCAUGAAAGAAAAACACAGGCAAAGGCCCGACAUGAUGA ......(((((((((((((.((......(((......))).--...)))))))(((......))).......))))))))............. ( -22.90) >DroAna_CAF1 47930 82 - 1 UUGAGCCCUUU--UCCUGAAAACCGAAAGCUAAUUAAGGCAGAAAACCCU-UUUUGGCGGAAGGAUAACAAAGACAAAGACCAA--------A .......((((--..((.....((....(((((..((((........)))-).)))))....)).......))..)))).....--------. ( -11.60) >consensus CUGAACCCUUUGUUGCCAGAGGACGAAAGCUAAUUAAAGCG__AGGCCCUGGCUUCAUGAAAGAAAAACACAGGCAAAGGCCCAACAUGAUGA ......(((((((((((((.((......(((......)))......)))))))(((......))).......))))))))............. (-13.98 = -15.65 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:48 2006