Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,452,208 – 3,452,363 |
Length | 155 |
Max. P | 0.982398 |
Location | 3,452,208 – 3,452,302 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 77.57 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -16.93 |
Energy contribution | -16.52 |
Covariance contribution | -0.42 |
Combinations/Pair | 1.16 |
Mean z-score | -2.27 |
Structure conservation index | 0.65 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3452208 94 - 22224390 CAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCCAGCAGAGAGCAAAGACUUUUGCGAAAAAAAAGGGGGGGUCGGU---GUUGGAAAUGG--------------- ....((((((((((((((....)))))))))).))))(((((((..((.(.....(((((.......)))))....).))..)---)))))).....--------------- ( -29.80) >DroSec_CAF1 24291 74 - 1 CAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCCAGCAGAGAGCAAAGACUUU--------------------CGGU---GUUGGAAAUGG--------------- ....((((((((((((((....)))))))))).))))((((((((((((......))))--------------------)..)---)))))).....--------------- ( -25.90) >DroSim_CAF1 23985 74 - 1 CAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCCAGCAGAGAGCAAAGACUUU--------------------CGGU---GUUGGAAAUGG--------------- ....((((((((((((((....)))))))))).))))((((((((((((......))))--------------------)..)---)))))).....--------------- ( -25.90) >DroEre_CAF1 27560 87 - 1 CAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCCAGCAGAGAGCAAAGACUUUGG-----GAAAA--UGGGGGCGGG---GUUGGAAAAUG--------------- ....((((((((((((((....)))))))))).))))((((((.....((.....((..(.-----.....--)..))))...---)))))).....--------------- ( -22.50) >DroYak_CAF1 25609 83 - 1 CAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCCAGCAGAGAGCAAAGACUUUGG-----AAAAA------GGCGGU---GUUAGAAAUAG--------------- ((((((((((((((((((....))))))))))...(((((....).))))...........-----....)------))))))---)..........--------------- ( -23.40) >DroAna_CAF1 46114 105 - 1 CAUCGUCUAGUCAAAUUGCAAGUGAUUUGGUUCAGGCUCCAGCAGAGAGCAAGGACUUUCG-----AAAAA--GGGGCUAGGGAGACAUGGCAAGGGCCUGGGGGAAAGCGG ...(((....((((((((....))))))))(((((((.((....(((((......))))).-----.....--...((((.(....).))))..))))))))).....))). ( -29.70) >consensus CAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCCAGCAGAGAGCAAAGACUUU_G_____AAAAA______G_CGGU___GUUGGAAAUGG_______________ ....((((((((((((((....))))))))))...(((((....).))))..))))........................................................ (-16.93 = -16.52 + -0.42)
Location | 3,452,230 – 3,452,333 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -22.44 |
Consensus MFE | -19.80 |
Energy contribution | -19.56 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.84 |
Structure conservation index | 0.88 |
SVM decision value | 1.91 |
SVM RNA-class probability | 0.982398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3452230 103 - 22224390 GCGCUGAAAGAACAAAAAAAAAAUGUCGCGACAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCCAGCAGAGAGCAAAGACUUUUGCGAAAAAAAAG ((((((................((((....)))).((((((((((((((....)))))))))).))))..)))).(((((......))))))).......... ( -24.70) >DroSec_CAF1 24306 87 - 1 GCGUUGAAAGAACAAA---AAAAUGUCGCGACAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCCAGCAGAGAGCAAAGACUUU------------- ..((((...((.((..---....)))).))))...((((((((((((((....))))))))))...(((((....).))))..))))...------------- ( -21.70) >DroSim_CAF1 24000 87 - 1 GCGUUGAAAGAACAAA---AAAAUGUCGCGACAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCCAGCAGAGAGCAAAGACUUU------------- ..((((...((.((..---....)))).))))...((((((((((((((....))))))))))...(((((....).))))..))))...------------- ( -21.70) >DroEre_CAF1 27581 94 - 1 GCGUUGAAAGAACAAA---AAAAUGUCGCGACAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCCAGCAGAGAGCAAAGACUUUGG-----GAAAA- ..((((...((.((..---....)))).))))...((((((((((((((....)))))))))).))))(((..(((((........))))))-----))...- ( -22.80) >DroYak_CAF1 25626 94 - 1 GCGCUGAAAGAACAAA---AAAAUGUCGCGACAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCCAGCAGAGAGCAAAGACUUUGG-----AAAAA- ..((((..........---...((((....)))).((((((((((((((....)))))))))).))))..))))..((((......))))..-----.....- ( -21.30) >consensus GCGUUGAAAGAACAAA___AAAAUGUCGCGACAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCCAGCAGAGAGCAAAGACUUU_G______AAAA_ ..((((................((((....)))).((((((((((((((....)))))))))).))))..))))............................. (-19.80 = -19.56 + -0.24)
Location | 3,452,262 – 3,452,363 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 96.98 |
Mean single sequence MFE | -18.07 |
Consensus MFE | -17.09 |
Energy contribution | -17.34 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.95 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3452262 101 - 22224390 UACAAAAACCAAGUCGAAAAUAAAAACAAAGCGCUGAAAGAACAAAAAAAAAAUGUCGCGACAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCC ............((((..........((......))...((.((.........)))).))))...((((((((((((((....)))))))))).))))... ( -16.80) >DroSec_CAF1 24325 98 - 1 UACAAAAACCAAGUCGAAAAUAAAAACAAAGCGUUGAAAGAACAAA---AAAAUGUCGCGACAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCC ............((((........(((.....)))....((.((..---....)))).))))...((((((((((((((....)))))))))).))))... ( -18.50) >DroSim_CAF1 24019 98 - 1 UACAAAAACCAAGUCGAAAAUAAAAACAAAGCGUUGAAAGAACAAA---AAAAUGUCGCGACAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCC ............((((........(((.....)))....((.((..---....)))).))))...((((((((((((((....)))))))))).))))... ( -18.50) >DroEre_CAF1 27607 97 - 1 UACAAAAACA-AGUCGAAAAUAAAAACAAAGCGUUGAAAGAACAAA---AAAAUGUCGCGACAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCC ..........-.((((........(((.....)))....((.((..---....)))).))))...((((((((((((((....)))))))))).))))... ( -18.50) >consensus UACAAAAACCAAGUCGAAAAUAAAAACAAAGCGUUGAAAGAACAAA___AAAAUGUCGCGACAUCGUCUAGUCAAAUUGCAAGUGAUUUGACUCAGGCUCC ............((((..(..............((....))..............)..))))...((((((((((((((....)))))))))).))))... (-17.09 = -17.34 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:47 2006