Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,449,403 – 3,449,498 |
Length | 95 |
Max. P | 0.999905 |
Location | 3,449,403 – 3,449,498 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 92.63 |
Mean single sequence MFE | -31.36 |
Consensus MFE | -31.04 |
Energy contribution | -30.68 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.26 |
Mean z-score | -2.25 |
Structure conservation index | 0.99 |
SVM decision value | 4.47 |
SVM RNA-class probability | 0.999905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3449403 95 + 22224390 UCAGGCUAAUGACUGUGUUUCGUGUUCAUUAGACGGCGCAGGCCAAAAGAUAACGGCCACGUAAGCCAAGUUGGCCGAAAUGGGGACGAAAAACC .(((........)))..((((((.((((((....(((....))).........(((((((.........).)))))).)))))).)))))).... ( -28.40) >DroSec_CAF1 21556 95 + 1 UCAGGCUAAUGACUGCGUUUCGUGUUCAUUAGACGGCGCAGGCCAAAAGAUAACGGCCACGUUAACUAAGGUGGCCGAAAUGGGGACGAAAAACC .(((........)))..((((((.((((((....(((....))).........(((((((.((....)).))))))).)))))).)))))).... ( -33.00) >DroSim_CAF1 21656 95 + 1 UCAGGCUAAUGACUGCGUUUCGUGUUCAUUAGACGGCGCAGGCCAAAAGAUAACGGCCACGUUAACUAAGGUGGCCGAAAUGGGGACGAAAAACC .(((........)))..((((((.((((((....(((....))).........(((((((.((....)).))))))).)))))).)))))).... ( -33.00) >DroEre_CAF1 24814 94 + 1 UCGGGCUAAUGACUGUGCUUCGUGUUCAUUAGACGGCCCAGGCCAAAAGAUAAUGGCCACGUUAACUAAGGUGGCCGAGAUGG-GGCGAAAAACC .(((........)))((((((((.(((.......(((....)))..........((((((.((....)).)))))))))))))-))))....... ( -29.90) >DroYak_CAF1 22825 95 + 1 CCAGGCUAAUGACUGUGUUUCGUGUUCAUUAGACGGCCCAGGCCAAAAGAUAACGGCCAUGUUAACUAAGGUGGCUGAGAUGAGGACGAAAAACC .(((........)))..((((((.((((((....(((....))).........(((((((.((....)).))))))).)))))).)))))).... ( -32.50) >consensus UCAGGCUAAUGACUGUGUUUCGUGUUCAUUAGACGGCGCAGGCCAAAAGAUAACGGCCACGUUAACUAAGGUGGCCGAAAUGGGGACGAAAAACC .(((........)))..((((((.((((((....(((....))).........(((((((.((....)).))))))).)))))).)))))).... (-31.04 = -30.68 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:43 2006