Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,405,497 – 3,405,594 |
Length | 97 |
Max. P | 0.824483 |
Location | 3,405,497 – 3,405,594 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 76.57 |
Mean single sequence MFE | -18.62 |
Consensus MFE | -4.34 |
Energy contribution | -5.38 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.18 |
Mean z-score | -1.91 |
Structure conservation index | 0.23 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824483 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3405497 97 + 22224390 AUAUCCCAAAAAAUAGCCAACA-AAUAGUACUAAGCUGGUUAACACAAGAAAACU--AUGUAUACUAGCCUGCAGGCUAGAUCUUUGAUCACU---UAAGUAU ......................-....((((((((.(((((((.(((((....))--.)))...((((((....))))))....)))))))))---).))))) ( -18.90) >DroSec_CAF1 51904 90 + 1 AUAUCCG-AAAACUAGCCAACA-AAUAGAACUAAGCUGGUUAACGCAAAGAAACU--AACU----UGGUCUGCAGGCUA--UCUUUGGUUAAU---UAAAAAA .((.(((-((...(((((....-..((((.(((((.(((((..........))))--).))----)))))))..)))))--..))))).))..---....... ( -18.30) >DroSim_CAF1 53598 90 + 1 AUAUCCG-AAAACUAGCCAACA-AAUAGUACCAAGCUGGUUAACGCAAGGAAGCU--AACU----UGGUCUGCAGGCUA--UCUUUGGUUAAU---UAAAAAA .((.(((-((...(((((....-..(((.((((((.(((((..(....)..))))--).))----)))))))..)))))--..))))).))..---....... ( -26.10) >DroEre_CAF1 63578 93 + 1 AUAUCCG-AAAAAUAGCCAACA-AAUAGUACUAAGCUG-UUAAAACUGAGAAACUAUAUCC----UAGUCCGCAGGAUG--UGUUUAGUUAAUGUGUUUA-GU .......-..............-......(((((((((-(((..((((((....(((((((----(.(....)))))))--))))))))))))).)))))-)) ( -16.90) >DroYak_CAF1 54572 91 + 1 AUAUCCG-AAAAAUAGCCAACAAAAUAGUACUAAGCUG-UUAACACAUGGAAGUUGUAUCU----UAGUCAGCAGGAUA--UCAUUAGUUACU---UGAA-AU ((((((.-........(((....((((((.....))))-))......)))..((((.....----....)))).)))))--)...........---....-.. ( -12.90) >consensus AUAUCCG_AAAAAUAGCCAACA_AAUAGUACUAAGCUGGUUAACACAAGGAAACU__AUCU____UAGUCUGCAGGCUA__UCUUUGGUUAAU___UAAA_AU .............(((((((.....((((.....))))..........................((((((....))))))....)))))))............ ( -4.34 = -5.38 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:22 2006