Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,371,993 – 3,372,087 |
Length | 94 |
Max. P | 0.500000 |
Location | 3,371,993 – 3,372,087 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -21.73 |
Consensus MFE | -11.91 |
Energy contribution | -12.10 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.19 |
Mean z-score | -2.11 |
Structure conservation index | 0.55 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3371993 94 + 22224390 AAUAAUAUUUUAUACACAUUGCUGUGUAUGC--UACCU----AAUGCCAUUCAAUGUGGCAACCAUCAUCGGCCAUUCAAAAAGGACUCCCUUUGAGGGC ..........((((((((....)))))))).--.....----..((((((.....))))))..........(((.(((((..(((....))))))))))) ( -23.50) >DroSec_CAF1 19264 90 + 1 AAUAAUAUUUUAUACUCAUUGCUCUGUAUGC--UAACU----AA-GCCCUUCAAUAUGGCAACCA---UCGGCCAUUCAAAAGGGACUCCCUUUGAGGGC ..........(((((..........))))).--.....----..-((((((....(((((.....---...)))))...((((((...)))))))))))) ( -20.90) >DroSim_CAF1 19187 90 + 1 AAUAAUAUUUUAUACACAUAGCUCUGUAUGC--UAACU----AA-GCCCUUCAAUAUGGCAACCA---UCGGCCAUUCAAAAAGGACUCCCUUUGAGGGC ..................((((.......))--))...----..-((((((....(((((.....---...)))))....(((((....))))))))))) ( -21.40) >DroYak_CAF1 20864 95 + 1 ACUUAUGUUUUAUCGCUAUUCCUCUGCAUUGGCUAGCAAUGCUA--CCUUUUAAUGUGGCAACCA---UCGGGCAUUCAAAAAGGACUCCCUUUGAGGGC ...................(((((.((((((.....))))))..--((((((...(((.(.....---...).)))...)))))).........))))). ( -21.10) >consensus AAUAAUAUUUUAUACACAUUGCUCUGUAUGC__UAACU____AA_GCCCUUCAAUAUGGCAACCA___UCGGCCAUUCAAAAAGGACUCCCUUUGAGGGC .............................................((((((....(((((...........)))))....(((((....))))))))))) (-11.91 = -12.10 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:14 2006