Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,288,147 – 3,288,237 |
Length | 90 |
Max. P | 0.536652 |
Location | 3,288,147 – 3,288,237 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 91.71 |
Mean single sequence MFE | -15.90 |
Consensus MFE | -14.61 |
Energy contribution | -14.67 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.30 |
Structure conservation index | 0.92 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536652 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3288147 90 - 22224390 AUAACUGAUACCGAAAACUUGUUGCUAAAUUAGUGCAACUCAUUUGCAUUGAUUAAACUU-----AAUUCAUAUCUGAAUGCCCAUUUCAUUUGG ..........(((((....((..((..(((((((((((.....)))))))))))......-----.(((((....))))))).)).....))))) ( -15.30) >DroSim_CAF1 33718 90 - 1 AAAACUGACACCGAAAACUUGUUGCUAAAUUAGUGCAAAUCAUUUGCAUUGAUUAAACUU-----AAUUCAUAUCUGAAUGCCCAUUUAAUUUGG ..........(((((....((..((..(((((((((((.....)))))))))))......-----.(((((....))))))).)).....))))) ( -15.40) >DroEre_CAF1 60074 95 - 1 CAAACUGACACCGAAAACUUGUUGCUAAAUUAGUGCAAAUCAUUUGCAUUGAUUAAAUUGGCUAAACUUCAUAUCUGAAUGUCCAUUUAAUUUGG ..........(((((........(((((((((((((((.....))))))))))....)))))...((((((....)))).))........))))) ( -16.50) >DroYak_CAF1 59883 90 - 1 CAAACUGACACCGAAAACUUGUUGCUAAAUUAGUGCAAAUCAUUUGCAUUGAUUAAACUU-----AAUUCAUAUCUGAAUGCUCAUUUAAUUUGG ..........(((((....((..((..(((((((((((.....)))))))))))......-----.(((((....))))))).)).....))))) ( -16.40) >consensus AAAACUGACACCGAAAACUUGUUGCUAAAUUAGUGCAAAUCAUUUGCAUUGAUUAAACUU_____AAUUCAUAUCUGAAUGCCCAUUUAAUUUGG ..........(((((....((..((..(((((((((((.....)))))))))))............(((((....))))))).)).....))))) (-14.61 = -14.67 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:51 2006