Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,285,104 – 3,285,213 |
Length | 109 |
Max. P | 0.912467 |
Location | 3,285,104 – 3,285,213 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.75 |
Mean single sequence MFE | -37.47 |
Consensus MFE | -26.29 |
Energy contribution | -27.04 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.17 |
Mean z-score | -2.22 |
Structure conservation index | 0.70 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3285104 109 + 22224390 AUUGCAUAAUUUGGGGUAGUUCCUGUCACCCUU-----A------GGGGUCUUGAAAAGCAGCAACAGGCUGCGACAUGUCUGCUCCUGACAAGGGUCAAUUAUGCGCAUCAAUUAAAUU ...((((((((.(((((((..(.((((((((..-----.------.))))........(((((.....))))))))).).))))))).(((....))))))))))).............. ( -39.00) >DroSim_CAF1 30147 114 + 1 AUUGCAUAACUUGGGGUGGUUCCUGGCACCCUUUCUACA------GAAAGAGAGAGAAGCAGCAACAGGCUGCGACAUGUCUGCCCCUGACAAGGGUCAAUUAUGCGCAUCAAUUAAACU ...((((((...((((..(..(.((.....((((((...------...))))))....(((((.....)))))..)).).)..))))((((....)))).)))))).............. ( -35.30) >DroEre_CAF1 56891 120 + 1 AUUGUGUAACUCGGGGUGGUUCUUGUCACCCUUCCUAUGGAGUGAGGGUUCUUGAAAACCGGCAACAGGCUGCGACAUGUCUGCCCCUGACAAGGGUCAAUUAUGCGCAUCAAUUAAACU ..((((((....((((..(....(((((((((..((....))..)))))..........((((.....)))).))))...)..))))((((....))))....))))))........... ( -38.80) >DroYak_CAF1 56625 120 + 1 AUUGUUUAACUUGGGGUGGUUCUUGGCACCCUUCCCAUAAAGAGAGGGUUCUUGAAAACCAGCAACAGGCUGCGACAUGUCUGCUCCUGACAAGGGUCAAUUAUGCGCAUCAAUUAAACU ...((((((((((..((((((.(..(.(((((..(......)..)))))..)..).))))).)..)))).((((.((((..((..(((....)))..))..))))))))....)))))). ( -36.80) >consensus AUUGCAUAACUUGGGGUGGUUCCUGGCACCCUUCCUAUA______GGGUUCUUGAAAACCAGCAACAGGCUGCGACAUGUCUGCCCCUGACAAGGGUCAAUUAUGCGCAUCAAUUAAACU ...((((((...(((((((..(.((((.(((..............)))..........(((((.....))))))))).).)))))))((((....)))).)))))).............. (-26.29 = -27.04 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:50 2006