Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,262,590 – 3,262,709 |
Length | 119 |
Max. P | 0.713044 |
Location | 3,262,590 – 3,262,709 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.32 |
Mean single sequence MFE | -26.77 |
Consensus MFE | -22.00 |
Energy contribution | -21.94 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.14 |
Mean z-score | -1.64 |
Structure conservation index | 0.82 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713044 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3262590 119 - 22224390 UUUCGAUUUAUUAGAUACAUAUUACUCAUAUAUGAUCUCUUUGUUCGGGCAGCUGAUGAUCAAUCAGAAGUGAUCUCAUC-CAGAGGCUGGGUUCUUUCAGCUUUCAUAUUUGCUCAUUU ....((...(..((((.(((((.......)))))))))..)...))(((((((((((.....)))))..((((.(((...-..)))((((((....))))))..))))..)))))).... ( -28.00) >DroSim_CAF1 14480 117 - 1 -CUCGAUAUGUCAGAUCCAUAUUACUCACAUAUGAUCUCUUUGUUCGGGCAGCUGAUGAUCAAUCAGAAGUGAUCUCAUU-CAGAGGCUGGGUUCUUUCAGCUUUCAUAU-UGCUCAUUU -...((......(((((.((((.......)))))))))......))((((((((((.(((((........)))))....)-)))((((((((....)))))))).....)-))))).... ( -28.20) >DroEre_CAF1 40796 118 - 1 -CUCGGUAUAUUAGAUCUAUAUUACUCAUAUAUGAUCUCUUUGUCUGCGUUGCUGAUGAUCAAUCAGAAGUGAUCUCAUCUCGGAGGCUGGCUUCUUUCAGCUUUCAUAU-UGCUCAUUU -(.(((.(((..((((((((((.....))))).)))))...)))))).).....(((((.((((..((..((....))..))(((((((((......)))))))))..))-)).))))). ( -26.70) >DroYak_CAF1 39675 118 - 1 -CUCGAUAUCUUAGAUCUCUAUUACUCAUAUAUGAUCUCUUUGUCCGGGCUGCUGAUGAUCAAUCAGAAGUGAUCUCAUCUCAGAGGCUGGGUUCUUUUAGCUUUCAUAU-UGCUCAUUU -...((((....(((((................)))))...)))).((((..(((((.....)))))..((((.(((......)))((((((....))))))..))))..-.)))).... ( -24.19) >consensus _CUCGAUAUAUUAGAUCCAUAUUACUCAUAUAUGAUCUCUUUGUCCGGGCAGCUGAUGAUCAAUCAGAAGUGAUCUCAUC_CAGAGGCUGGGUUCUUUCAGCUUUCAUAU_UGCUCAUUU .(((((......((((.(((((.......)))))))))......)))))...(((((.....)))))((((((.(........(((((((((....))))))))).......).)))))) (-22.00 = -21.94 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:40 2006