Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,259,543 – 3,259,647 |
Length | 104 |
Max. P | 0.526298 |
Location | 3,259,543 – 3,259,647 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 89.16 |
Mean single sequence MFE | -29.82 |
Consensus MFE | -21.74 |
Energy contribution | -24.80 |
Covariance contribution | 3.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.50 |
Structure conservation index | 0.73 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526298 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3259543 104 - 22224390 UUGGCGGUGUAUCGCAAAUUGAAAUGCGGUGCACGUGACGUAGUCGCAGACAUGGCUAAAAUGCCAAAAUGCGUGGUCAAAUUGUACGUACAUUGGCCCCAAAC (((((.((((((((((........))))))))))(((((...))))).......)))))...(((((..((((((.........))))))..)))))....... ( -35.60) >DroSim_CAF1 11433 101 - 1 UUGGCGGUGUAUCGCAAAUUGAAAUGCGGCGCACGUGACGUAGUCGCAGACAUGGCUAAAAU--CAAAAUGCGUGGUCAAAUUGUACGUACAUUGGCCCCAA-G ..((((((((((.((((.(((....((.(((((..(((..((((((......))))))...)--))...))))).))))).))))..))))))).)))....-. ( -29.70) >DroEre_CAF1 37716 89 - 1 -------------GCAAAUUGAAAUGCGCUGCACGUGACGUAGUCGCAGACAUGGCUAAAAU--CAAAAUGCGUGGUCAAAUUGUACGUACAUUGGCCCCAGCU -------------(((........)))((((((..(((..((((((......))))))...)--))...)))(.((((((..(((....))))))))).)))). ( -22.00) >DroYak_CAF1 36453 102 - 1 UUGGCGGUGUAUCGCAAAUUGAAAUGCGGUGCACGUGACGUAGUCGCAGACAUGGCUAAAAU--CAAAAUGCGUGGUCAAAUUGUACGUACGUUGGCCCCAACU ..(((.((((((((((........))))))))))..((((((((.((((...((((((..((--....))...))))))..)))))).)))))).)))...... ( -32.00) >consensus UUGGCGGUGUAUCGCAAAUUGAAAUGCGGUGCACGUGACGUAGUCGCAGACAUGGCUAAAAU__CAAAAUGCGUGGUCAAAUUGUACGUACAUUGGCCCCAACU (((((.((((((((((........))))))))))(((((...))))).......)))))..........((.(.((((((..(((....))))))))))))... (-21.74 = -24.80 + 3.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:39 2006