Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,252,770 – 3,252,877 |
Length | 107 |
Max. P | 0.967073 |
Location | 3,252,770 – 3,252,877 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 97.37 |
Mean single sequence MFE | -22.32 |
Consensus MFE | -19.42 |
Energy contribution | -19.82 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.96 |
Structure conservation index | 0.87 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.967073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3252770 107 + 22224390 AAAACAUACGUAUAAAAAAUAAAUAGAAGCCGUCUUGAAUAAACACACGGAUGCCCGUCACACGCGCUGAUAUACGCGCUACAACGGUAUUUUUAGCGAAAGCAAAA .......................((((((((((..((.........((((....)))).....((((........))))..)))))))..)))))((....)).... ( -21.70) >DroSec_CAF1 22199 106 + 1 AAAACAUACGUAUAAAAAAUAAAUAGAAGCCGUCUUGAAUAAACACACGGAUGCCCGUCACACGCGCUGAUAUA-GCGCUAGAACGGUAUUUUUAGCGAAAGCGAAA .......................((((((((((((...........((((....)))).....((((((...))-)))).)).)))))..)))))((....)).... ( -23.40) >DroSim_CAF1 4107 106 + 1 AAAACAUACGUAUAAAAAAUAAAUAGAAGCCGUCUUGAAUAAACACACGAAUGCCCGUCACACGCGCUGAUAUA-GCGCUAGAACGGUAUUUUUAGCGAAAGCGAAA .......................((((((((((((...........(((......))).....((((((...))-)))).)).)))))..)))))((....)).... ( -20.30) >DroEre_CAF1 29269 106 + 1 AAAACAUACGUAUAAAAAAUAAAUAGAAGCCGUCUUGAAUAAACACACGGAUGCCCGUCACACGCGCUGAAAUA-GCGCUAGAUCGGUAUUUUUAGCGAAAGCGAAA .......................((((((((((((...........((((....)))).....((((((...))-)))).))).))))..)))))((....)).... ( -23.40) >DroYak_CAF1 29062 106 + 1 AAAACAUACGUAUAAAAAAUAAAUAGAAGCCGUCUUGAAUAAACACACGGAUGCCCGUCACACGCGCUGAAAUA-GCGCUACAACGGUAUUUUUAGCGAAAGCGAAA .......................((((((((((..((.........((((....)))).....((((((...))-))))..)))))))..)))))((....)).... ( -22.80) >consensus AAAACAUACGUAUAAAAAAUAAAUAGAAGCCGUCUUGAAUAAACACACGGAUGCCCGUCACACGCGCUGAUAUA_GCGCUAGAACGGUAUUUUUAGCGAAAGCGAAA .......................((((((((((.............((((....)))).....((((........))))....)))))..)))))((....)).... (-19.42 = -19.82 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:36 2006