Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,221,189 – 3,221,285 |
Length | 96 |
Max. P | 0.858923 |
Location | 3,221,189 – 3,221,285 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 86.21 |
Mean single sequence MFE | -18.97 |
Consensus MFE | -18.59 |
Energy contribution | -18.02 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.19 |
Mean z-score | -1.48 |
Structure conservation index | 0.98 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3221189 96 - 22224390 ------------GGGGCUAACCACUCAAUACGAGGCGAAAGAUUAAUGGACAAAUCGAACCGAAAGCCCCGAAAAUCGAAAUUAAGUUUCUACAUAAUGAACAAAAUG- ------------((((((..((((((.....))).(....).....))).....(((...))).)))))).......(((((...)))))..................- ( -19.40) >DroSec_CAF1 30256 97 - 1 ------------GGGGCUAACCACUCAAUACGAGGCGAAAGAUUAAUGGACAAAUCGAACCGAAAGCCCCGAAAAUCGAAACAAAGUUUCUACAUAAUGAACAAAAUGA ------------((((((..((((((.....))).(....).....))).....(((...))).)))))).......(((((...)))))................... ( -20.70) >DroEre_CAF1 32146 104 - 1 -----GAAGAAGGGGGUUAACCACUCAAUACGAGGCGAAAGAUUAAUGGUCAAAUCGAACCGAAAACCCCGAAUAUCGAAACAAAGUCUCUACAUAAUGAACAAAAUGU -----.......((((((.(((((((.....))).(....).....))))....(((...))).))))))....................................... ( -16.60) >DroYak_CAF1 35566 105 - 1 GAGGGGAAAGAGGGGGUUGACCACUUAAUACGAGGCGAAAGAUUAAUGGACAAAUCGAACCGAAAGCCCCGAAAAUCGAAACAAAGUUUCUACAUAAUGAACAAA---- ..((((.....((.((((..((((((.....))).(....).....)))...))))...)).....)))).......(((((...)))))...............---- ( -19.20) >consensus ____________GGGGCUAACCACUCAAUACGAGGCGAAAGAUUAAUGGACAAAUCGAACCGAAAGCCCCGAAAAUCGAAACAAAGUUUCUACAUAAUGAACAAAAUG_ ............((((((..((((((.....))).(....).....))).....(((...))).)))))).......(((((...)))))................... (-18.59 = -18.02 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:25 2006