Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,206,826 – 3,206,931 |
Length | 105 |
Max. P | 0.966043 |
Location | 3,206,826 – 3,206,931 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 92.49 |
Mean single sequence MFE | -28.75 |
Consensus MFE | -25.65 |
Energy contribution | -26.27 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.07 |
Mean z-score | -2.23 |
Structure conservation index | 0.89 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.966043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3206826 105 + 22224390 UUUUUCCGUACAACAUAUUUGACUAAUUCCCCGGGGUCGAAGACCUCUCUUCAUGAGCCCCAAAAAUAAUGGAAAAA---GGGUGGAAAUUGUCCACUCGCAUAAUUA (((((((((....((....))...........(((((.(((((....)))))....))))).......)))))))))---(((((((.....)))))))......... ( -30.50) >DroSec_CAF1 16184 105 + 1 UUUUUCCGUAUGACAUAUUUGACUAAUUCCCCGGGGUAGAAGACCUCUCUUCAUGAGACCCGAAAAUAAUGGAAGAA---GGGUGGAAAUUGUCCACUCGCAUAAUUA (((((((((....((....))..........((((.(((((((....))))).))...))))......)))))))))---(((((((.....)))))))......... ( -28.70) >DroEre_CAF1 17930 108 + 1 UUUUUCCGUAUGACAUAUUUGACUAAUUCCCCGGGGUCGCUGACCUCUCUUCAUGAGCCCCAAAAAUAAUGGACAAAGAGGGGUGGGUAUAGUCCACUCGCAUAAUUA ........((((........(((((...(((.((((((...)))))).........(((((..................))))))))..)))))......)))).... ( -25.31) >DroYak_CAF1 20689 105 + 1 UUUUUCCGUAUGACAUGUUUGACUAAUUCCCCGGGGUCGAAGACCUCUCUUCAUGAGCCCCAAAAAUAAUGGAAAAA---GGGUGGAAAUUGUCCACUCGCAUAAUUA (((((((((....((....))...........(((((.(((((....)))))....))))).......)))))))))---(((((((.....)))))))......... ( -30.50) >consensus UUUUUCCGUAUGACAUAUUUGACUAAUUCCCCGGGGUCGAAGACCUCUCUUCAUGAGCCCCAAAAAUAAUGGAAAAA___GGGUGGAAAUUGUCCACUCGCAUAAUUA (((((((((....((....))...........(((((.(((((....)))))....))))).......)))))))))...(((((((.....)))))))......... (-25.65 = -26.27 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:14 2006