Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 450,918 – 451,010 |
Length | 92 |
Max. P | 0.803542 |
Location | 450,918 – 451,010 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 80.97 |
Mean single sequence MFE | -38.25 |
Consensus MFE | -22.84 |
Energy contribution | -23.62 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.25 |
Mean z-score | -2.29 |
Structure conservation index | 0.60 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.803542 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 450918 92 + 22224390 CGCCCAUGCCAAUGCAGCCGCCGCCCAUCUGCUGGCCAGCCACAAUGCAGCGGCUGCGGCUGCUGUGGCCGCCG-GCCAAUAUCUGCCCAACC .(((...((((..((((((((.(((...(((((((....)))....)))).))).))))))))..))))....)-))................ ( -41.50) >DroPse_CAF1 73800 84 + 1 CGCCCAUGCCCACG---CCGCCGCCCACCUGCUGGCCAGUCACAAUGCGGCGGCCGCCGCCGCAGUUGCUGCCG-GGCAGUAUCUUCC----- ......(((((...---..(((((......)).)))((((.((..((((((((...)))))))))).))))..)-)))).........----- ( -34.50) >DroSec_CAF1 53134 93 + 1 CGCCCACGCCAACGCAGCCGCCGCCCAUCUGCUGGCCAGCCACAAUGCAGCGGCUGCGGCUGCUGUGGCCGCCCGCCCAAUACCUGCCCAACC .((....((((..((((((((.(((...(((((((....)))....)))).))).))))))))..)))).....))................. ( -38.00) >DroEre_CAF1 63481 92 + 1 CGCCCACGCCAACGCAGCCGCCGCCCACCUGCUGGCCAGCCACAAUGCAGCGGCUGCGGCUGCCGUGGCCGCCG-GCCAAUACCUGCCCAACC .(((..(((((..((((((((.(((...(((((((....)))....)))).))).))))))))..))).))..)-))................ ( -41.30) >DroAna_CAF1 73761 89 + 1 CGCCCAU---CAUGCCGCUGCCGCCCAACUCCUGGCCAGCCACAAUGCAGCCGCUGCAGCGGCAGUGGCCGCCG-GGCAGUAUCUUCCGAAUC .((((..---...(((((((((((........(((....)))...(((((...))))))))))))))))....)-)))............... ( -39.70) >DroPer_CAF1 77593 84 + 1 CGCCCAUGCCCACG---CCGCCGCCCACCUGCUGGCCAGUCACAAUGCGGCGGCCGCCGCCGCAGUUGCUGCCG-GGCAGUAUCUUCC----- ......(((((...---..(((((......)).)))((((.((..((((((((...)))))))))).))))..)-)))).........----- ( -34.50) >consensus CGCCCAUGCCAACGCAGCCGCCGCCCACCUGCUGGCCAGCCACAAUGCAGCGGCUGCGGCUGCAGUGGCCGCCG_GCCAAUAUCUGCCCAACC ((.((((......((((((((.(((...(((((((....)))....)))).))).)))))))).)))).))...................... (-22.84 = -23.62 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:30 2006