Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,141,315 – 3,141,422 |
Length | 107 |
Max. P | 0.530410 |
Location | 3,141,315 – 3,141,422 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 77.48 |
Mean single sequence MFE | -27.83 |
Consensus MFE | -14.82 |
Energy contribution | -15.22 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.20 |
Mean z-score | -1.76 |
Structure conservation index | 0.53 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530410 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3141315 107 + 22224390 UCCUCGUUUUCUGUUGUCUUCUGUUCUGCUCACCAGCUGAGCUUUAAAAUCCUUGUUGCACUUUGACAUAAAGCUGAAGGAAGCGAAAGAAACAAGUGGAGAUCUUA (((.(..(((((.(((.(((((.(((.(((....)))..(((((((.......((((.......)))))))))))))))))))))).)))))...).)))....... ( -22.81) >DroSec_CAF1 99252 101 + 1 UCCUCGCUUUU------UUUCGGAGCUGCUCACCAGCUGAGCUUUAAAAUCCUUGCUGCACUUUGACAAAAAGCUGAAGGAAGCGAAGGAAAAGAGAGGAGAUCUCA (((((.((((.------(((..((((((((....)))..)))))..)))((((((((...((((..(.....)..))))..))).))))))))).)))))....... ( -30.20) >DroSim_CAF1 100737 100 + 1 UCCUCGCUUU-------UUUCUGAGCUGCUCACCAGCUGAGCUUUAAAAUCCUUGCUGCACUUUGACAAAAAGCUGAAGGAAGCGAAGGAAAAGAGCGGAGAUCUCA ((..((((((-------(((((..((((((((.....))))).......((((((((..............)))..))))))))...)))))))))))..))..... ( -33.44) >DroEre_CAF1 105289 99 + 1 UCCUCGUAA--------UUUCUGAGCUGCUCACCAGCUGAGCUUUCAAUUCCCUGCUGUGCUUUGGCAAAAAGCUGAAGGAUGCGAAGGAAACAAGAGGAGAACUUG (((((....--------....((((..(((((.....))))).)))).((((.(((.((.(((..((.....))..))).)))))..))))....)))))....... ( -30.50) >DroYak_CAF1 106942 83 + 1 UCCUCGUUU--------CCCUGGAGCUGCUCACCAGCUGAGCUUUAAAAUCCCUGCUGCACUUUGACAAAAAGCUUCAGGAUGCUAAAGGA---------------- ((((.((..--------.((((((((((((((.....)))))...........(((........).))...)))))))))..))...))))---------------- ( -22.20) >consensus UCCUCGUUUU_______UUUCUGAGCUGCUCACCAGCUGAGCUUUAAAAUCCUUGCUGCACUUUGACAAAAAGCUGAAGGAAGCGAAGGAAAAAAGAGGAGAUCUCA ((((((((...................(((((.....))))).......((((.(((..............)))...)))))))).))))................. (-14.82 = -15.22 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:54 2006