Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 442,951 – 443,067 |
Length | 116 |
Max. P | 0.750548 |
Location | 442,951 – 443,067 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 75.08 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -14.57 |
Energy contribution | -16.55 |
Covariance contribution | 1.98 |
Combinations/Pair | 1.16 |
Mean z-score | -1.86 |
Structure conservation index | 0.50 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750548 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 442951 116 - 22224390 CCAGGAAAACAGUCCUGUCGCCGGCUCGGCCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCCUAAAUGGAUAAAUGGUAUU-UUGUAUGAAUGGCUCAGCG .(((((......)))))......(((.((((.((((((..((((.........(((((((.((((.....))))..((.....)).....)))))))-)))))))))))))).))). ( -34.00) >DroSec_CAF1 45397 110 - 1 CCUGGAAAACAGUCCUGUCGCCAGUUCGGUCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCAUAAAUGGU------AUAUU-UUGUUUGAAUGGCUCAGCG .((((...(((....)))..))))....((.((..(((((((((..(((.(((.((((...((((.....)))).))))...))).------)))..-))))..)))))..)).)). ( -29.50) >DroSim_CAF1 24443 110 - 1 CCUGGAAAACAGUCCUGUCGCCAGCUCGGUCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCAUAAAUGGU------AUAUU-UUGUUUGAAUGGCUCAGCA ..(((...(((....)))..)))(((.((((.(((((...((((..(((.(((.((((...((((.....)))).))))...))).------)))..-)))).))))))))).))). ( -31.50) >DroEre_CAF1 55799 91 - 1 CCAG-------------------GCUCGGUCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCGUAAAUGGU------AUAUU-UUGUAUGAAUGGCCCAGCG ....-------------------(((.((((.((((((..((((..(((.(((.((((...((((.....)))).))))...))).------)))..-)))))))))))))).))). ( -29.60) >DroYak_CAF1 43009 93 - 1 CCAA----A-------------UGCUCGGGCGAUUCAUUCGCAAUUCAAUCCAAAUGCCAAGGCGAUGCCCGCUAGCAUAAAUGGU------AUAUU-UUGUAUGAAUGGCCCAGCG ....----.-------------.(((.((((.((((((..((((......(((.((((...((((.....)))).))))...))).------.....-)))))))))).))))))). ( -32.10) >DroAna_CAF1 64171 90 - 1 ----------------------GGCCCGG-AGAUACAUUUGCAAUUUAUUCCAAAUGCCAGGACUAUUUC----AGCAUCAAUUGCAAAUAUAUAUUCUUGAAUGAAUGGCCCAGCG ----------------------((((...-..(((.((((((((((((.(((........))).))....----......)))))))))).)))((((......))))))))..... ( -18.40) >consensus CCAG____A_____________AGCUCGGUCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCAUAAAUGGU______AUAUU_UUGUAUGAAUGGCCCAGCG .......................(((.((((.((((((..((((..(((.(((.((((...((((.....)))).))))...))).......)))...)))))))))))))).))). (-14.57 = -16.55 + 1.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:29 2006