Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,130,006 – 3,130,117 |
Length | 111 |
Max. P | 0.500000 |
Location | 3,130,006 – 3,130,117 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 81.65 |
Mean single sequence MFE | -23.97 |
Consensus MFE | -14.10 |
Energy contribution | -14.22 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.79 |
Structure conservation index | 0.59 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3130006 111 + 22224390 UUU-CUAGCAUUCCUUUGCGGCUU-UUUGUGGUGUUCACUGUACCUGUCCUAACGGAACAAUUUGCCACAAUAGCUGCGACCCGUGCUCACUCACUCACAGCACAUUUUAGAC ..(-((((.......((((((((.-.((((((((.....(((.....(((....))))))...)))))))).))))))))...(((((...........)))))...))))). ( -31.70) >DroSec_CAF1 88330 105 + 1 UUU-CUGGCAUUCCUUGCCAGCUU-UUUGUGGUGUUUACUGUACCUGUCCUAACGGAACAAUUCGCCACAAUAGCU-CGACCCGUGCGCACUC-----CUGCUCAUUUUAGAC ...-.(((((.....)))))(((.-.((((((((.....(((.....(((....))))))...)))))))).)))(-(.....(((.(((...-----.))).)))....)). ( -28.60) >DroSim_CAF1 89618 105 + 1 UUU-CUGGCAUUCCCUUCCAGCUU-UUUGUGGUGUUUACUGUACCUGUCCUAACGGAACAAUUCGCCACAAUAGCU-CGACCCGUGCGCACUC-----CUGCUCAUUUUAGAC ..(-(((((((.....((.((((.-.((((((((.....(((.....(((....))))))...)))))))).))))-.))...))))(((...-----.)))......)))). ( -27.30) >DroEre_CAF1 93333 103 + 1 AUUAGUCGAAUUCCUUUUCGGCUU-UUAGUGGUGUUUACUGUACCUGUUCUAACCGAACAAUUUGCCACAAUAGCU-CCGGC---ACUCACUC-----CUGCGCAUUUUAGAC ...(((((((......))))))).-.(((..(((...........(((((.....)))))...((((.........-..)))---)..)))..-----)))............ ( -20.30) >DroYak_CAF1 95319 97 + 1 AUU-UUGAAAUUCCUUUCCGGCUUUUUUGUGGUGUCUACUGUACCUGUCCUAACCGAACAAUUUGCCACAAUAGCU-CAGCC---CCUUACUC-----CUGCUCAUU------ ...-...............((((...((((((((.....(((...............)))...)))))))).....-.))))---........-----.........------ ( -11.96) >consensus UUU_CUGGCAUUCCUUUCCGGCUU_UUUGUGGUGUUUACUGUACCUGUCCUAACGGAACAAUUUGCCACAAUAGCU_CGACCCGUGCUCACUC_____CUGCUCAUUUUAGAC ...................((((...((((((((.....(((..((((....)))).)))...)))))))).))))..................................... (-14.10 = -14.22 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:53 2006