Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,067,312 – 3,067,456 |
Length | 144 |
Max. P | 0.941539 |
Location | 3,067,312 – 3,067,416 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 73.45 |
Mean single sequence MFE | -22.62 |
Consensus MFE | -14.65 |
Energy contribution | -14.72 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -1.85 |
Structure conservation index | 0.65 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3067312 104 - 22224390 UUUUUCC----AGCUUGUCUAUUGAU----AUGUCUAAUGGGAAAUGUUGGUUAACCGUUAGACACAUGUAGCAAUGUGUAU----UUUCAUGUUCGAUUCCACGUUUUUUUUUUU .......----.(((((((....)))----)((((((((((..(((....)))..)))))))))).....)))((((((...----..((......))...))))))......... ( -21.50) >DroSec_CAF1 38781 97 - 1 UUUUUGUAUGUAUUUCGUCUAUUGAUACGUAUGUCUGAUGGGAAAUGUUGGUUAAGCGUUAGACACAUGUAGCAAUGUGUAU----UUUC-------------CGUUUUUUUUU-- .....(((((((((.........)))))))))....(((((((((((((.....))).....((((((......))))))))----))))-------------)))).......-- ( -21.80) >DroEre_CAF1 39671 96 - 1 UUUUUCC----AGCUGGUCUAUUGAU----AUGUCUGAUGGGAGAUGUUGGUUAACCGUUAGACACAUGUAGCAAUGUGUUUUUUUUUUCAUGUUUGAUUCCG----------U-- ....((.----(((.(((..((..((----((.(((....))).))))..))..)))...((((((((......))))))))..........))).)).....----------.-- ( -21.80) >DroYak_CAF1 40456 91 - 1 U-UCUCC----AGCUGGUCUAUUGAU----GUGUCUGAUGGGAGAUGUUGGUUAACCGUUAGACAUAUGUAGCCAUGUGUAU----UUUCAUGUUCGAUUCCC----------U-- .-..((.----((((((.((((..((----(((((((((((..(((....)))..)))))))))))))))))))).(((...----...)))))).)).....----------.-- ( -25.40) >consensus UUUUUCC____AGCUGGUCUAUUGAU____AUGUCUGAUGGGAAAUGUUGGUUAACCGUUAGACACAUGUAGCAAUGUGUAU____UUUCAUGUUCGAUUCC___________U__ ...................(((((.......((((((((((..(((....)))..)))))))))).......)))))....................................... (-14.65 = -14.72 + 0.06)
Location | 3,067,348 – 3,067,456 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 82.96 |
Mean single sequence MFE | -30.38 |
Consensus MFE | -18.65 |
Energy contribution | -18.53 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -2.27 |
Structure conservation index | 0.61 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3067348 108 - 22224390 AACGCUCAUAAGUCAAGCUAACCCACAGUGAAAGUGUAUUUUUUUCC----AGCUUGUCUAUUGAU----AUGUCUAAUGGGAAAUGUUGGUUAACCGUUAGACACAUGUAGCAAU ...((((((.((.((((((.((.....))(((((.......))))).----)))))).))......----.((((((((((..(((....)))..)))))))))).))).)))... ( -28.20) >DroSec_CAF1 38802 116 - 1 CACGCUCAAAAGUCAAGCUAUCCCGCAGUGAAAGUGUAUUUUUUUGUAUGUAUUUCGUCUAUUGAUACGUAUGUCUGAUGGGAAAUGUUGGUUAAGCGUUAGACACAUGUAGCAAU ...(((((...(((......((((((((.(((((......)))))(((((((((.........)))))))))..))).)))))((((((.....)))))).)))...)).)))... ( -26.50) >DroEre_CAF1 39699 105 - 1 ---UCACUUAAGUGAAGCUAUACCACAGUGAAAGUGUAUUUUUUUCC----AGCUGGUCUAUUGAU----AUGUCUGAUGGGAGAUGUUGGUUAACCGUUAGACACAUGUAGCAAU ---((((....)))).((((((...(((((((((.......))))).----.))))(((....)))----.((((((((((..(((....)))..))))))))))..))))))... ( -30.30) >DroYak_CAF1 40480 104 - 1 ---UCACAAAAGUGAGGCUAUACCACAGCGAAAGUGUAUUU-UCUCC----AGCUGGUCUAUUGAU----GUGUCUGAUGGGAGAUGUUGGUUAACCGUUAGACAUAUGUAGCCAU ---((((....))))((((((....((((...((.......-.))..----.))))........((----(((((((((((..(((....)))..))))))))))))))))))).. ( -36.50) >consensus ___GCACAAAAGUCAAGCUAUACCACAGUGAAAGUGUAUUUUUUUCC____AGCUGGUCUAUUGAU____AUGUCUGAUGGGAAAUGUUGGUUAACCGUUAGACACAUGUAGCAAU ................(((((..(((.......)))...................................((((((((((..(((....)))..))))))))))...)))))... (-18.65 = -18.53 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:30 2006