Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 427,229 – 427,324 |
Length | 95 |
Max. P | 0.998952 |
Location | 427,229 – 427,324 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 76.59 |
Mean single sequence MFE | -29.80 |
Consensus MFE | -19.30 |
Energy contribution | -19.90 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.92 |
Structure conservation index | 0.65 |
SVM decision value | 3.30 |
SVM RNA-class probability | 0.998952 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 427229 95 + 22224390 GGGAGUGGGGAUCCUGA-------CAGAGUGUGUGCCACUCGGCACAUAAUUGUUUGAAACAAAUGUUGUGCACACACUCACAGCGGCAGCA---GCACACACUC ....((.((....)).)-------).((((((((((......(((((((.((((.....)))).)).)))))...........((....)).---)))))))))) ( -31.50) >DroPse_CAF1 42949 79 + 1 --------------UGU-------GUGAGUGUGUGCCACUCGGCACAUAAUUGUUUGAAACAAAUGUAGUGCACACACACACUCCAACAAUC---GUACACA--C --------------(((-------(((((((((((.......(((((((.((((.....)))).))).))))...)))))))))..((....---)))))))--. ( -24.40) >DroSec_CAF1 29668 98 + 1 GGGAGUGGGGAUCCUUA-------CAGAGUGUGUGCCACUCGGCACAUAAUUGUUUGAAACAAAUGUAGUGCACACACUCACAGCGGCAGCAGUAGCACACACUC ....(((((....))))-------).((((((((((.(((..(((((((.((((.....)))).))).))))...........((....))))).)))))))))) ( -34.70) >DroYak_CAF1 26986 101 + 1 GUGAGUGGGGAUACAGAGAUCCAGCAGAGUGUGUGCCACUCGGCACAUAAUUGUUUGAAACAAAUGUAGUGCACACACUCACAGCGGCAGCA----CACACACUC (((.(((.((((......))))....((((((((((.(((....((((..((((.....)))))))))))))))))))))...((....)).----))).))).. ( -34.00) >DroPer_CAF1 46515 79 + 1 --------------UGU-------GUGAGUGUGUGCCACUCGGCACAUAAUUGUUUGAAACAAAUGUAGUGCACACACACACUCCAACAAUC---GUACACA--C --------------(((-------(((((((((((.......(((((((.((((.....)))).))).))))...)))))))))..((....---)))))))--. ( -24.40) >consensus G_GAGUGGGGAU_CUGA_______CAGAGUGUGUGCCACUCGGCACAUAAUUGUUUGAAACAAAUGUAGUGCACACACUCACAGCGGCAGCA___GCACACACUC ..........................((((((((((.(((....((((..((((.....)))))))))))))))))))))......................... (-19.30 = -19.90 + 0.60)
Location | 427,229 – 427,324 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 76.59 |
Mean single sequence MFE | -31.64 |
Consensus MFE | -18.88 |
Energy contribution | -19.48 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.76 |
Structure conservation index | 0.60 |
SVM decision value | 2.94 |
SVM RNA-class probability | 0.997838 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 427229 95 - 22224390 GAGUGUGUGC---UGCUGCCGCUGUGAGUGUGUGCACAACAUUUGUUUCAAACAAUUAUGUGCCGAGUGGCACACACUCUG-------UCAGGAUCCCCACUCCC ((((((((((---..(((((((.....))).))(((((....((((.....))))...)))))..))..))))))))))..-------...((....))...... ( -35.10) >DroPse_CAF1 42949 79 - 1 G--UGUGUAC---GAUUGUUGGAGUGUGUGUGUGCACUACAUUUGUUUCAAACAAUUAUGUGCCGAGUGGCACACACUCAC-------ACA-------------- (--((((...---(((((((.(((((((((....))).))))))......))))))).((((((....))))))....)))-------)).-------------- ( -26.10) >DroSec_CAF1 29668 98 - 1 GAGUGUGUGCUACUGCUGCCGCUGUGAGUGUGUGCACUACAUUUGUUUCAAACAAUUAUGUGCCGAGUGGCACACACUCUG-------UAAGGAUCCCCACUCCC ((((((((((((((...(((((.....))).))((((.....((((.....))))....))))..))))))))))))))..-------...((....))...... ( -35.10) >DroYak_CAF1 26986 101 - 1 GAGUGUGUG----UGCUGCCGCUGUGAGUGUGUGCACUACAUUUGUUUCAAACAAUUAUGUGCCGAGUGGCACACACUCUGCUGGAUCUCUGUAUCCCCACUCAC (((((.(..----(((..((((...(((((((((((((((((((((.....))))..))))....))).)))))))))).)).))......)))..).))))).. ( -35.80) >DroPer_CAF1 46515 79 - 1 G--UGUGUAC---GAUUGUUGGAGUGUGUGUGUGCACUACAUUUGUUUCAAACAAUUAUGUGCCGAGUGGCACACACUCAC-------ACA-------------- (--((((...---(((((((.(((((((((....))).))))))......))))))).((((((....))))))....)))-------)).-------------- ( -26.10) >consensus GAGUGUGUGC___UGCUGCCGCUGUGAGUGUGUGCACUACAUUUGUUUCAAACAAUUAUGUGCCGAGUGGCACACACUCUG_______UCAG_AUCCCCACUC_C .........................(((((((((((((((((((((.....))))..))))....))).)))))))))).......................... (-18.88 = -19.48 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:27 2006