Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,027,136 – 3,027,239 |
Length | 103 |
Max. P | 0.595184 |
Location | 3,027,136 – 3,027,239 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.40 |
Mean single sequence MFE | -26.74 |
Consensus MFE | -17.66 |
Energy contribution | -17.70 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.11 |
Mean z-score | -1.57 |
Structure conservation index | 0.66 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595184 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3027136 103 - 22224390 UUAGCCGCGGACUCUUUAAGAGUCCCCUUUUGCUGUUAUCCUUGGCAAGCCAUCCAAUUAUCCUUGCGCGAUAUUCAACAUACCAAAUCAUCCAGAUC-----------------ACGGU ...((((.((((((.....))))))...((((.((((....((((((((.............))))).))).....))))...))))...........-----------------.)))) ( -20.22) >DroSec_CAF1 7519 109 - 1 GUAGCCGCGGACUCUUUAAGAGUCCC--UCUGCUGUUAUCCUUGGC-AACCAUCCAAUUAUCCUGGCGCGUUAUCCAUCAUCC--GAUCAUCCAGAUCACCUUG------CGCUCACGGU ((((..(.((((((.....)))))))--.))))(((((....))))-).............(((((((((........)....--((((.....)))).....)------))).)).)). ( -26.50) >DroSim_CAF1 2490 110 - 1 GUAGCCGCGGACUCUUUAAGAGUCCC--UCUGCUGUUAUCCUUGGCGAACCAUCCAAUUAUCCUGGCGCGAUGUCCAUCAUCC--GAUCAUCCAGAUCACCUCG------CGCUCACGGU (((((.((((((((.....)))))).--...)).)))))..((((........))))....((((((((((((.....)))).--((((.....)))).....)------))).)).)). ( -31.60) >DroEre_CAF1 7526 116 - 1 GUAGCCGCGGACUCUUUAAGAGUCCC--UCUGCUGUUAUCCUUGGCAAACCAUUCAAUUAUCCUUAUUCGAU-CCCAUCAUCC-AGAUCAUUCAGAUCAUCCAGAUUAUCGGCUUAUGGU ..(((((.((((((.....)))))).--((((.(((((....))))).........................-..........-.((((.....))))...))))....)))))...... ( -25.10) >DroYak_CAF1 7501 114 - 1 GUAGCCGCGGACUCUUUAAGAGUCCC--UCUGCUGUUAUCCUUGGCAAACCAUCC--UCAUCCGAUCUCAAU-CAGAUCACCC-AGAUCAUCCAGAUCAUGUGGAACACCGACUUAUGGU ((((..(.((((((.....)))))))--.))))(((((....))))).(((((..--((....(((((....-.))))).(((-(((((.....)))).)).))......))...))))) ( -30.30) >consensus GUAGCCGCGGACUCUUUAAGAGUCCC__UCUGCUGUUAUCCUUGGCAAACCAUCCAAUUAUCCUGGCGCGAU_UCCAUCAUCC_AGAUCAUCCAGAUCACCU_G______CGCUCACGGU ...((((.((((((.....)))))).....(((((.......)))))......................................((((.....))))..................)))) (-17.66 = -17.70 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:18 2006