Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,968,770 – 2,968,871 |
Length | 101 |
Max. P | 0.936944 |
Location | 2,968,770 – 2,968,871 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 85.22 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -17.19 |
Energy contribution | -18.20 |
Covariance contribution | 1.01 |
Combinations/Pair | 1.12 |
Mean z-score | -3.41 |
Structure conservation index | 0.66 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.936944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2968770 101 + 22224390 UGGAUAAUUGGGCUAUGCGAAAAAUCAGCAGCCAUCAAAUCCCUUGCAUUCUAC-AAUACAUAUGUGUAAACAUAUG----CUAUUGUCCACUUUAUUUACUCUAU .((((.....((((..((.........)))))).....))))..........((-(((((((((((....)))))))----.)))))).................. ( -21.70) >DroSec_CAF1 346409 106 + 1 UGGAUAAUUGGGCUAUGCGAAAAAUCAGCGGCCAUCAUUGGCACUGCGCCCACCAAAUCCCUAUGUACAUACAUAUGAACACUAUUGUCCACUUUAUUUACUCUAU (((((((((((((..(((.........)))((((....)))).....))))).......(.(((((....))))).)......))))))))............... ( -25.70) >DroSim_CAF1 312076 106 + 1 UGGAUAAUUGGGCUAUGCGAAAAAUCAGCAGCCAUCAUUGGCACUGCGCCCACCAAAUCCCCAUGUACAUACAUAUGUACACUAUUGUCCACUUUAUUUACUCUAU (((((((((((((..(((.........)))((((....)))).....)))))...........(((((((....)))))))..))))))))............... ( -30.90) >consensus UGGAUAAUUGGGCUAUGCGAAAAAUCAGCAGCCAUCAUUGGCACUGCGCCCACCAAAUCCCUAUGUACAUACAUAUG_ACACUAUUGUCCACUUUAUUUACUCUAU ((((((((.((((..(((.........)))((((....)))).....))))..........(((((....)))))........))))))))............... (-17.19 = -18.20 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:22 2006