Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,917,300 – 2,917,403 |
Length | 103 |
Max. P | 0.570325 |
Location | 2,917,300 – 2,917,403 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 70.03 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -9.29 |
Energy contribution | -8.93 |
Covariance contribution | -0.35 |
Combinations/Pair | 1.42 |
Mean z-score | -1.62 |
Structure conservation index | 0.45 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2917300 103 + 22224390 ACUUAAAUGCUCAUUAGAGUGCAGUGUGGGAGA--ACGGAAAUGC--CCCCCCU----CUAAAGACCCUCUUACCAUCCAAAAAUAUCUGAAUCAGAAUCUCCCACUUCCC- ........((((....)))).....((((((((--..(((.....--......(----(....))...........))).......((((...)))).)))))))).....- ( -21.25) >DroSec_CAF1 303367 88 + 1 ACUUAAAUGCUCAUUAGAGUGCAGUGUGGGGGU--ACGGAACUGC--CCC-------------------CUUACCAUCCAAAAAUAUCUGAAUCAGAAUCUCCCACCUCCC- ........((((....))))..((.((((((((--(.((......--..)-------------------).))))...........((((...))))....)))))))...- ( -20.60) >DroSim_CAF1 272938 88 + 1 ACUUAAAUGCUCAUUAGAGUGCAGUGUGGGGGA--ACGGAAAUGC--CCC-------------------CUUACCAUCCAAAAAUAUCUGAAUCAGAAUCUCCCACCUCCC- ........((((....))))..((.((((((((--..(((.....--...-------------------.......))).......((((...)))).))))))))))...- ( -20.26) >DroEre_CAF1 327922 103 + 1 ACUUAAAUGCUCAUUAGAGUGCAGUGUGGGGGA--ACGGAAAGGC--UCCCCUU----CCAAAUACCC-CUUACCAUCCAAAAAUAUCUGAAUCAGAAACCCCCUUCUCCCC ........((((....)))).......(((((.--..((((.((.--...))))----))........-.................((((...))))..)))))........ ( -21.50) >DroYak_CAF1 312346 100 + 1 ACUUAAAUGCUCAUUAGAAAGCAGUGUGGGGGA--ACGGAAAUGC--UCCCCUU-----UAAACACCC-CGUGCCAUCCAAAAAUAUCUGAAUCAGAA-CCUCCUUCCCC-A .......((((........)))).....(((((--(.(((.....--.......-----....(((..-.))).............((((...)))).-..)))))))))-. ( -18.50) >DroAna_CAF1 477220 99 + 1 ACUUAAGCGCUCAUUAAAUUGAAGUGCCAGGAAGGCCAAAAAGGGGGUGUAUUGCAAAACAAAUCCCC---------CCCAAAAAAUCUGCA---AAAUACUUAAGCCCCC- .(((..(((((((......)).)))))....)))........((((((((((((((............---------...........))))---..))))....))))))- ( -21.30) >consensus ACUUAAAUGCUCAUUAGAGUGCAGUGUGGGGGA__ACGGAAAUGC__CCCCCUU______AAA_ACCC_CUUACCAUCCAAAAAUAUCUGAAUCAGAAUCCCCCACCUCCC_ ......((((((((....))).)))))(((((.....((.........))....................................((((...))))..)))))........ ( -9.29 = -8.93 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:14 2006