Publications
-
Genomic organization of eukaryotic tRNAs. Bermudez-Santana, C., Stephan-Otto, C., Kirsten, T., Engelhard, J.,Prohaska, S., Steigele, S., Stadler, P. F. BMC genomics, 2010, 11:270.
- Identification and Classification of Small RNAs in Transcriptome
Sequence Data D. Langenberger, C.I. Bermudez-Santana, P.F. Stadler, S. Hoffmann
Pac Symp Biocomput. 2010:80-7
-
Evolutionary genomics of microRNAs and their relatives.
Andrea Tanzer, Markus Riester, Jana Hertel, Clara Isabel
Bermudez-Santana, Jan Gorodkin, Ivo L. Hofacker, and Peter F. Stadler.
In Gustavo Caetano-Anolles, editor, Evolutionary Genomics. Wiley, in
press. 2010.
-
Evidence for Human microRNA-Offset RNAs in Small RNA Sequencing Data
David Langenberger, Clara Bermudez-Santana, Jana Hertel, Philipp
Khaitovich, Steve Hoffmann, Peter F. Stadler
Bioinformatics. 2009 Sep 15;25(18):2298-301.
-
Homology-Based Annotation of Non-coding RNAs in the Genomes of Schistosoma
mansoni and Schistosoma japonicum. Claudia S. Copeland, Manja Marz, Dominic Rose, Jana Hertel, Paul J. Brindley,
Clara Bermudez Santana, Stephanie Kehr, Camille Stephan Otto-Attolini, Peter
F. Stadler
BMC Genomics 2009, 10:464.
- A classification of central nucleotides induced by the influence of neighboring nucleotides in triplets. Galindo, J., Bermudez, C.I and Daza E.E. 2006,
J. of Mol. Struct. THEOCHEM. Volume 769:1-3, 103-109
- tRNA Structure from a Graph and Quantum Theoretical Perspective. Galindo, J., Bermudez, C.I and Daza E.E. 2006,J. Theor. Biol. Volume 240: 4, 574-582
- Characterization and Comparison of Escherichia coli transfer RNAs by graph theory based on secondary structure.Bermudez, C.I and Daza E.E., Andrade, L.E. J. Theor.
Biol.1999, 197:193-205.