BiobaseInfernal: Infernal and HMMer data structures

This library provides data structures for dealing with covariance models and hidden Markov models as used by Infernal and HMMer.

README

(included from project) Christian Höner zu Siederdissen - BiobaseInfernal

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BiobaseInfernal

Low-level handling of Infernal file formats. Appropriate efficient Haskell data structures for high-performance computations with Infernal covariance models.

In particular, the *_states* structure provides a numerics-friendly interface to the actual model.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/

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Usage of this library in a Haskell project:

This package provides no "main" executable, but rather only library functionality. (Though sometimes tools, or example programs are provided). Usage requires some knowledge of Haskell.
  1. Include the library in your cabal file.
  2. Use stack to simplify development. This will require adding the library with an exact version to the stack.yaml file. This includes the option to include this library directly from its github repository.