Sarah J. Berkemer

Contact Information

bsarah@bioinf.uni-leipzig.de

Publications

Algebraic Dynamic Programming on Trees
Sarah J. Berkemer, Christian Höner zu Siederdissen, Peter F. Stadler. MDPI Algorithms, 2017

SMORE: Synteny Modulator Of Repetitive Elements.
Sarah J. Berkemer, Anne Hoffmann, Cameron R. A. Murray, Peter F. Stadler, MDPI Life, 2017

Expansion of Gene Clusters, Circular Orders, and the Shortest Hamiltonian Path Problem
Sonja J. Prohaska, Sarah J. Berkemer, Fabian Gärtner, Thomas Gatter, Nancy Retzlaff, The Students of the Graphs and Biological Networks Lab 2017, Christian Höner zu Siederdissen, Peter F. Stadler, Journal of Mathematical Biology (JOMB), 2017

Orthologs, turn-over, and remolding of tRNAs in primates and fruit flies.
Cristian A Velandia-Huerto, Sarah J Berkemer, Anne Hoffmann, Nancy Retzlaff, Liliana C Romero-Marroqin, Maribel Hernandez Rosales, Peter F Stadler, Clara I Bermudez-Santana, BMC Genomics 17.1., 2016.

Processed Small RNAs in Archaea and BHB Elements
Sarah Berkemer, Master thesis, University of Leipzig, 2015. (pdf file)

Processed Small RNAs in Archaea and BHB Elements.
Sarah J. Berkemer, Christian Höner zu Siederdissen, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J. Prohaska, and Peter F. Stadler, Genomics and Computational Biology 1.1., 2015.

Spiders can be recognized by counting their legs.
Sarah J. Berkemer, Ricardo Chavez, Adrian Fritz, Marc Hellmuth, Maribel Hernandez-Rosales and Peter F. Stadler, Mathematics in Computer Science 9.4., 437-441. 2014.

Comparative Detection of Processed Small RNAs in Archaea.
Christian Höner zu Siederdissen, Sarah Berkemer, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J.Prohaska, and Peter F. Stadler, IWBBIO 2014, Granada, Spain.

An Orthology Quality Measure (Poster)
Maribel Hernandez-Rosales, Sarah Berkemer, Gabriel Moreno-Hagelsieb, Peter F Stadler
RECOMB-CG 2013, Lyon, France.
BSB 2014, Belo Horizonte, Brazil.

Cograph Editing: An Approach to Adjust the Orthology Relation for the Reconstruction of Phylogenetic Trees
Sarah Berkemer, Bachelor thesis, Saarland University, 2012. (zip directory with pdf and code.)

Conferences

Herbstseminar 2017
Bioinformatics Leipzig, Doubice, Czech Republic.

Winterseminar 2017
TBI Vienna, Bled, Slovenia.

RNA Computational Biology 2016
Hinxton, UK.

Winterseminar 2016
TBI Vienna, Bled, Slovenia.

Herbstseminar 2015
Bioinformatics Leipzig, Doubice, Czech Republic.

Winterseminar 2015
TBI Vienna, Bled, Slovenia.

BSB 2014
ISCB-Latin America, Belo Horizonte, Brazil.

Herbstseminar 2014
Bioinformatics Leipzig, Doubice, Czech Republic.

IWBBio 2014
University of Granada, Granada, Spain.

Winterseminar 2014
TBI Vienna, Bled, Slovenia.

Herbstseminar 2013
Bioinformatics Leipzig, Doubice, Czech Republic.

Hal8 2013
Universität Leipzig, Leipzig, Germany.

Special Commitments

JSPS Summer Program 2017
2 months research stay at Earth-Life-Science Institute, Tokyo Institute of Technology, Tokyo, Japan

Google Summer of Code 2014
Here you can find the GSoC website and here my GSoC blog.

Member of the Computer Science students' representative council at University of Leipzig
04/2014 - 03/2015

Member of the Computer Science students' representative council at Saarland University
07/2011 - 06/2012

Jugger trainer
For more information see here.


author unknown