List of Publications

Submitted

In press

A Topological Approach to Chemical Organizations G. Benkö, F. Centler, P. Dittrich, C. Flamm, B.M.R. Stadler and P.F. Stadler Artificial Life, in press (2008).

Replicator Dynamics in Protocells
P.F. Stadler and B.M.R. Stadler In: Protocells, M.Bedau, S.Rasmussen, et al (eds.)

Published

[21] [Abstract] [PDF]

Saddles and Barrier in Landscapes of Generalized Search Operators
Christoph Flamm, Bärbel M. R. Stadler, Peter F. Stadler
In: Foundations of Genetic Algortithms IX
Stephens, C. R., Toussaint, M., Whitley, D. and Stadler, P. F. (eds.)
Lecture Notes Comp. Sci. 4436: 194-212 (2007)
Springer Verlag, Berlin, Heidelberg.

[20] [Abstract] [PDF] [Supplemental Material]

U7 snRNAs: A Computational Survey
Manja Lindemeyer, Axel Mosig, Bärbel M. R. Stadler, Peter F. Stadler
Geno.Prot.Bioinf. 5: 187-195 (2007)

[19] [Abstract] [PDF] [Supplemental Material]

Evolution of the Vertebrate Y-RNA Cluster
Axel Mosig, Meng Guofeng, Bärbel M. R. Stadler, Peter F. Stadler
Th.Biosci., 126: 9-14 (2007).

[18] [Abstract] [Postscript] [PDF]

Genotype-Phenotype Maps
Peter F. Stadler, Bärbel M. R. Stadler
Biological Theory 3: 268-279 (2006).

[17] [Abstract] [Postscript] [PDF]
[Supplemental Material]

Evolutionary Patterns of Non-Coding RNAs
A.F. Bompfünewerer, Ch. Flamm, C. Fried, G. Fritzsch, I.L. Hofacker, J. Lehmann, K. Missal, A. Mosig, B. Müller, S.J. Prohaska, B.M.R. Stadler, P.F. Stadler, A. Tanzer, S. Washietl, Ch. Witwer
Th.Biosci. 123: 301-369 (2005).

[16] [Abstract] [Postscript] [PDF]
The Topology of Evolutionary Biology
Bärbel M.R. Stadler and Peter F. Stadler
G.Ciobanu, G. Rozenberg (Eds.): Modeling in Molecular Biology,
Springer Verlag, Natural Computing Series 2004; pp. 267-286

[15] [Abstract] [Postscript] [PDF]

Proto-Organism Kinetics: Evolutionary Dynamics of Lipid Aggregates with Genes and Metabolism
Steen Rasmussen, Liaohai Chen, Bräbel M.R. Stadler, Peter F. Stadler
Orig. Life Evol. Biosph. 34: 171-180 (2004).

[14] [Abstract] [Postscript] [PDF]
Higher Separation Axioms in Generalized Closure Spaces
Bärbel M. R. Stadler, Peter F. Stadler
Commentationes Mathematicae Warszawa, Ser. I, 43: 257-273 (2003)

[13] [Abstract] [Postscript] [PDF]

Molecular Replicator Dynamics
B.M.R. Stadler and P.F. Stadler
Adv. Complex Systems 6: 47-77 (2003)
presented at Emergence in Chemical Systems, University of Alaska Anchorage, June 20-23 2002

[12] [Abstract] [PostScript] [PDF]
Diffusion of a Population of Interacting Replicators in Sequence Space
Bärbel M.R. Stadler,
Adv.Complex Syst. 5: 457-461 (2002).

[11] [Abstract] [Postscript] [PDF]

Generalized Topological Spaces in Evolutionary Theory and Combinatorial Chemistry
B.M.R. Stadler, P.F. Stadler
J.Chem.Inf.Comput.Sci., 42: 577-585 (2002).
Supplemental Material:
Basic Properties of Filter Convergence Spaces [Postscript]
Basic Properties of Closure Spaces [Postscript]

[10] (SFI 01-02-011) [Abstract] [Postscript] [PDF]

Recombination Spaces, Metrics, and Pretopologies
Bärbel M.R. Stadler, Peter F. Stadler, Max Shpak, Günter P. Wagner
Z.Phys.Chem, 216: 217-234 (2002).

[9] (SFI 01-09-052) [Abstract] [Postscript] [PDF]

Evolution in Systems of Ligation-Based Replicators
Bärbel M. R. Stadler, Peter F. Stadler, Peter R. Wills
Z.Phys.Chem., 216: 21-33 (2002).

[8] (SFI 00-12-070) [Abstract] [Postscript]

The topology of the possible: Formal spaces underlying patterns of evolutionary change
B. M. R. Stadler, P. F. Stadler, G. Wagner and W. Fontana
J.Theor.Biol. 213: 241-274 (2001).

[7] (SFI 00-07-040) [Abstract] [Postscript] [PDF]

Abstention in Dynamical Models of Spatial Voting
Bärbel M. R. Stadler,
Physica A 287: 660-668 (2000).

[6] (SFI 99-09-065) [Abstract] [Postscript]

Dynamics of Autocatalytic Replicator Networks Based on Higher Order Ligation Reactions
Bärbel M.R. Stadler, Peter F. Stadler, Peter Schuster
Bull.Math.Biol. 62: 1061-1086 (2000).

[5] (SFI 98-08-072) [abstract] [Postscript]

Abstention Causes Bifurcations in Two-Party Voting Dynamics
Bärbel M. R. Stadler
Appl.Math.Comput. 114 215-223 (2000).

[4] (SFI 98-12-118) [abstract] [Postscript]

Adaptive Platform Dynamics in Multi-Party Spatial Voting.
Bärbel M. R. Stadler
Santa Fe Institute Preprint 98-12-118
Adv.Complex Syst. 2:101-116 (1999)

[3] (SFI 97-07-065) [abstract] [Postscript]

Selection Dynamics in Autocatalytic Systems: Templates Replicating Through Binary Ligation.
P R Wills, S A Kauffman, B M R Stadler, P F Stadler
Santa Fe Institute Preprint 97-07-065
Bull.Math.Biol. 60: 1073-1098 (1998)

[2] (SFI 95-07-10) [Abstract] [PostScript]

Segregation Distortion and Heteroclinic Cycles.
Bärbel M R Stadler
J.Theor.Biol. 183: 363-379 (1996).

[1] Dynamics of Small Autocatalytic Reaction Networks III: Monotonous Growth Functions.

Bärbel M R Stadler, Peter F Stadler
Bull.Math.Biol. 53: 469-485 (1991).

Theses

* PhD Thesis
Adaptive Platform Dynamics In Spatial Voting Models
Bärbel M R Stadler
Universität Wien, 1998.

* MSc Thesis
Segregation Distortion and Heteroclinic Cycles
Bärbel M R Stadler
Universität Wien, 1995.