@article{BMRStadler:91, author = {B{\"a}rbel M R Stadler and Peter F Stadler}, title = {Dynamics of Small Autocatalytic Reaction Networks {III}: Monotonous Growth Functions}, journal = {Bull.\ Math.\ Biol.}, volume = {53}, pages = {469-485}, year = {1991}, } @Article{BMRStadler:96, author = {B{\"a}rbel M. R. Stadler}, title = {Segregation Distortion and Heteroclinic Cycles}, journal = {J.\ Theor.\ Biol.}, volume = {183}, pages = {363-379}, year = {1996}, } @article{Wills:98a, author = {Peter R.\ Wills and Stuart A.\ Kauffman and B{\"a}rbel M.R.\ Stadler and Peter F.\ Stadler}, title = {Selection Dynamics in Autocatalytic Systems: Templates Replicating Through Binary Ligation}, journal = {Bull.\ Math.\ Biol.}, volume = {60}, pages = {1073-1098}, year = {1998}, note = {Santa Fe Institute Preprint 97-07-065}, } @Article{BMRStadler:99a, author = {B{\"a}rbel M.R.\ Stadler}, title = {Adaptive Platform Dynamics in Multi-Party Spatial Voting}, journal = {Adv.\ Complex Systems}, volume = {2}, pages = {101-116}, year = {1999}, note = {Santa Fe Institute Preprint 98-12-118}, } @Article{BMRStadler:00a, author = {B{\"a}rbel M.R.\ Stadler}, title = {Abstention Causes Bifurcations in Two-Party Voting Dynamics}, journal = {Appl.\ Math.\ Comput.}, volume = {114}, pages = {215-223}, year = {2000}, note = {Santa Fe Institute Preprint 98-08-072}, } @article{BMRStadler:00b, author = {B{\"a}rbel M. R. Stadler and Peter F. Stadler and Peter Schuster}, title = {Dynamics of Autocatalytic Replicator Networks Based on Higher Order Ligation Reactions}, journal = {Bull.\ Math.\ Biol.}, volume = {62}, pages = {1061-1086}, year = {2000}, note = {SFI preprint 99-09-65}, } @article{BMRStadler:00c, author = {B{\"a}rbel M. R. Stadler}, title = {Abstention in Dynamical Models of Spatial Voting}, journal = {Physica A}, volume = {287}, pages = {660-668}, year = {2000}, note = {SFI preprint 00-07-040}, } @article{BMRStadler:01a, author = {B{\"a}rbel M. R. Stadler and Peter F. Stadler and G{\"u}nter Wagner and Walter Fontana}, title = {The topology of the possible: Formal spaces underlying patterns of evolutionary change}, journal = {J.\ Theor.\ Biol.}, volume = {213}, pages = {241-274}, year = {2001}, note = {SFI preprint 00-12-070}, } @Article{BMStadler:02a, author = {B{\"a}rbel M. R. Stadler and Peter F. Stadler and Peter R. Wills}, title = {Evolution in Systems of Ligation-Based Replicators}, journal = {Z.\ Phys.\ Chem.}, pages = {216}, volume = {21-33}, year = {2002}, } @article{BMRStadler:02b, author = {B{\"a}rbel M. R. Stadler and Peter F. Stadler and Max Shpak and G{\"u}nter P. Wagner}, title = {Recombination Spaces, Metrics, and Pretopologies}, journal = {Z.\ Phys.\ Chem.}, volume = {216 }, pages = {217-234 }, year = {2002}, note = {SFI preprint 01-02-011}, } @Article{BMRStadler:02c, author = {B{\"a}rbel M. R. Stadler and Peter F. Stadler}, title = {Generalized Topological Spaces in Evolutionary Theory and Combinatorial Chemistry}, journal = {J.\ Chem.\ Inf.\ Comput.\ Sci.}, pages = {577-585}, volume = {42}, year = {2002}, note = {Proceedings MCC 2001, Dubrovnik} } @Article{BMRStadler:02d, author = {B. M. R. Stadler}, title = {Diffusion of a Population of Interacting Replicators in Sequence Space}, journal = {Adv.\ Complex Systems}, year = {2002}, volume = {5}, number = {4}, pages = {457-461} } @Article{BMRStadler:03a, author = {Stadler, B{\"a}rbel M. R. and Stadler, Peter F.}, title = {Molcular Replicator Dynamics}, journal = {Adv.\ Complex Syst.}, volume = {6}, pages = {47-77}, year = {2003}, note = {presented at \emph{Emergence in Chemical Systems}, Anchorage AK, June 2002; SFI \# 02-09-049} } @Article{BMRStadler:03b, author = {B{\"a}rbel M. R. Stadler and Peter F. Stadler}, title = {Higher Separation Axioms in Generalized Closure Spaces}, journal = {Commentationes Math.\ Warszawa, Ser.\ I}, volume = {43}, pages = {257-273}, year = {2003}, } @Article{Rasmussen:04a, author = {Steen Rasmussen and Liaohai Chen and B{\"a}rbel M. R. Stadler and Peter F. Stadler}, title = {Proto-Organism Kinetics: Evolutionary Dynamics of Lipid Aggregates with Genes and Metabolism}, journal = {Orig.\ Life Evol.\ Biosph.}, volume = {34}, pages = {171-180}, year = {2004}, } @InProceedings{BMRStadler:04a, author = {Stadler, B{\"a}rbel M. R. and Stadler, Peter F.}, title = {The Topology of Evolutionary Biology}, booktitle = {Modeling in Molecular Biology}, editor = {Ciobanu}, publisher = {Springer Verlag}, address = {267-286}, year = {2004}, series = {Natural Computing Series}, } @Article{Bompfuenewerer:05, author = {Bompf{\"u}newerer, Athanasius F. and Flamm, Christoph and Fried, Claudia and Fritzsch, Guido and Hofacker, Ivo L. and Lehmann, J{\"o}rg and Missal, Kristin and Mosig, Axel and M{\"u}ller, Bettina and Prohaska, Sonja J. and Stadler, B{\"a}rbel M. R. and Stadler, Peter F. and Tanzer, Andrea and Washietl, Stefan and Witwer, Christina}, title = {Evolutionary Patterns of Non-Coding RNAs}, journal = {Th.\ Biosci.}, year = {2005}, pages = {301-369}, volume = {123}, } @Article{Stadler:06a, author = {Stadler, Peter F. and Stadler, B{\"a}rbel M. R.}, title = {Genotype Phenotype Maps}, journal = {Biological Theory}, pages = {268-279 }, volume = {3}, year = {2006}, note = {Konrad Lorenz Institute Workshop on Biological Information organized by Werner Callebaut in 2002}, } @Article{Mosig:07a, author = {Mosig, Axel and Guofeng, Meng and Stadler, B{\"a}rbel M. R. and Stadler, Peter F.}, title = {Evolution of the Vertebrate {Y} {RNA} Cluster}, journal = {Th.\ Biosci.}, volume = {126}, pages = {9-14}, year = {2007}, } @InProceedings{Flamm:07a, author = {Flamm, Christoph and Stadler, B{\"a}rbel M. R. and Stadler, Peter F.}, title = {Saddles and Barrier in Landscapes of Generalized Search Operators}, booktitle = {Foundations of Genetic Algortithms IX}, editor = {Stephens, C. R. and Toussaint, M. and Whitley, D. and Stadler, P. F.}, publisher = {Springer}, address = {Berlin, Heidelberg}, year = {2007}, pages = {194-212}, series = {Lecture Notes Comp.\ Sci.}, volume = {4436}, note = {9th International Workshop, FOGA 2007, Mexico City, Mexico, January 8-11, 2007}, } @Article{Marz:07a, author = {Marz, Manja and Mosig, Axel and Stadler, B{\"a}rbel M. R. and Stadler, Peter F.}, title = {{U7} {snRNAs}: A Computational Survey}, journal = {Geno.\ Prot.\ Bioinf.}, volume = {5}, pages = {187-195}, year = {2007}, } @Article{Benkoe:06a, author = {Benk{\"o}, Gil and Centler, Florian and Dittrich, Peter and Flamm, Christoph and Stadler, B{\"a}rbel M. R. and Stadler, Peter F.}, title = {A Topological Approach to Chemical Organizations}, journal = {Alife}, volume = { }, pages = { }, year = {2006}, note = {accepted}, } @InCollection{Stadler:05a, author = {Stadler, Peter F. and Stadler, B{\"a}rbel M. R.}, editor = {Rasmussen, Steen and Bedau, Mark A. and Chen, Liaohai and Deamer, David and Krakauer, David C. and Packard, Norman H. and Stadler, Peter F. }, title = {Replicator Dynamics in Protocells}, booktitle = {Protocells: Bridging Nonliving and Living Matter}, publisher = {MIT Press}, year = {2008}, pages = { }, note = {in press}, }