Acanthamoeba catellanii TBestDB(1) ESTs and clustered ESTs Acropora millepora Ensembl(2) traces (source date: 06/05/2007) Acropora palmata Ensembl traces (source date: 06/05/2007) Acyrthosiphon pisum Ensembl traces (dod: 17.07.07) Alternaria brassicicola WUSTL GSC(3) scaffolds (v1.0) Aplysia californica NCBI traceDB(4) traces (dod: 05.07.07) Aspergillus nidulans Broad(5) scaffolds & putative genes (release 4) Aspergillus terreus Broad scaffolds (source date: 05/05/2006) & CDS (source date: 05/09/2007) (assembly 1) Batrachochytrium dendrobatidis Broad scaffolds (source date: 02/16/2007), CDS (source date: 02/28/2007) & excluded reads (source date: 02/16/2007) (assembly 1) Biomphalaria glabrata NCBI traceDB traces (dod: 05.07.07) Blastocystis hominis TBestDB ESTs and clustered ESTs Botrytis cinerea Broad scaffolds (source date: 04/25/2006) & putative genes (dod: 16.05.2007) (assembly 1) Brugia malayi Ensembl traces (dod: 21.02.2007) Caenorhabditis elegans Wormbase(6) chromosomes - WS177 Caenorhabditis japonica NCBI traceDB traces (dod: 14.03.07) Caenorhabditis remanei NCBI traceDB traces (dod: 14.03.07) Caenorhabditis sp. 4 (CE-II) NCBI traceDB traces (dod: 14.03.07) Candida glabrata CBS 138 Genolevures(7) Genolevures 2 Release 2: chromosomes (source date: 2004/06/30) & CDS (source date: 2006/08/17) Capitella capitata JGI(8) contigs (dod: 28.06.07) Capitella sp. I ECS-2004 Ensembl traces (dod: 21.02.07) Cerebratulus lacteus Ensembl traces (dod: 21.02.07) Chaetomium globosum CBS 148.51 Broad scaffolds (source date: 03/14/2006) & putative genes (source date: 04/26/2006) Chlamydomonas reinhardtii JGI scaffolds (v3.1) & 1st milestone transcripts Ciona intestinalis JGI scaffolds & transcripts (v2.0) Coprinopsis cinerea Broad scaffolds (assembly 1) & putative genes (gene set v1.0) Cyanidioschyzon merolae strain 10D Univ. of Tokio(9) scaffolds (source date: 16.11.2004) & coding regions (source date: 17.09.2005) Daphnia pulex Ensembl traces (dod: 21.02.07) Dictyostelium discoideum NCBI complete genome (dod: 09.05.07) & coding regions (source date: 10.06.07) Encephalitozoon cuniculi GB-M1 NCBI complete genome & coding regions (Build 1.1) Euglena gracilis TBestDB ESTs and clustered ESTs Euprymna scolopes Ensembl traces (dod: 21.02.07) Fusarium verticillioides Broad scaffolds & transcripts (assembly 3) Helobdella robusta Ensembl traces (dod: 21.02.07) Heterorhabditis bacteriophora Ensembl traces (dod: 21.02.07) Hydra magnipapillata NCBI traceDB traces (dod: 11.06.07) Ixodes scapularis Ensembl traces (dod: 21.02.07) Karlodinium micrum TBestDB ESTs and clustered EST Laccaria bicolor JGI scaffolds & transcripts (v1.0) Leishmania major strain Friedlin Sanger(10) genome v5.2 Lottia gigantea Ensembl traces (dod: 21.02.07) Magnaporthe grisea Broad scaffolds, excluded reads & predicted transcripts (assembly release 5) Malus x domestica TFT(11) contigs (apple database v4.0) Mastigamoeba balamuthi TBestDB ESTs and clustered EST Monosiga brevicollis JGI scaffolds, cDNA reads & transcripts (v1.0) Naegleria gruberi JGI scaffolds, transcripts & ESTs (v1.0) Nectria haematococca JGI chromosomes & transcripts (v2.0) Nematostella vectensis JGI scaffolds & transcripts (v1.0) Neosartorya fischeri TIGR(12) scaffolds & coding regions (dod: 14.05.07) Neurospora crassa Broad scaffolds (assembly 7) & CDS (release 3) Oryza sativa RAP-DB(13) IRGSP build 4.0 Oscarella carmela CIG UC Berkeley(14) ESTs (dod: 15.07.07) Ostreococcus lucimarinus JGI chromosomes & transcripts (v2.0) Ostreococcus tauri JGI chromosomes & transcripts (v2.0) Oxytricha trifallax Ensembl traces (dod: 21.02.07) Paramecium tetraurelia Genoscope(15) scaffolds (v2.1) & mRNAs (v1.0) Pediculus humanus Ensembl traces (dod: 21.02.07) Petromyzon marinus WUSTL GSC scaffolds (assembly v3.0) Phaeodactylum tricornutum JGI chromosomes & transcripts (v2.0) Phanerochaete chrysosporium JGI scaffolds (v2.0) & transcripts (v2.1) Physarum polycephalum NCBI/TBestDB traces/ESTs and clustered ESTs Physcomitrella patens JGI scaffolds & transcripts (v1.1) Phytophthora ramorum JGI scaffolds & transcripts (v1.1) Plasmodium falciparum 3D7 NCBI chromosomes & coding regions Platynereis dumerilii Ensembl traces (dod: 21.02.07) Polysphondylium pallidum TBestDB ESTs and clustered EST Populus trichocarpa JGI scaffolds (v1.0) & transcripts (v1.1) Porites lobata Ensembl traces (dod: 21.02.07) Postia placenta JGI scaffolds & transcripts (v1.0) Prunus dulcis CUGI(16) contigs (dod: 23.05.07) Prunus persica CUGI contigs (dod: 23.05.07) Puccinia graminis f. sp. tritici Broad scaffolds (assembly 1) Pyrenophora tritici-repentis Broad scaffolds (assembly 1) Reniera sp. JGI-2005 Ensembl traces (dod: 21.02.07) Saccharomyces cerevisiae S288c Stanford(17) chromosomes, ESTs & CDSs (dod: 05/03/2007) Saccoglossus kowalevskii Ensembl traces (dod: 10.05.07) Schistosoma mansoni Sanger scaffolds (assembly release v3.1) & predicted genes (v4.0) Schizosaccharomyces pombe 972h- Sanger chromosomes & CDS (dod: 05/03/2007) Schmidtea mediterranea WUSTL GSC scaffolds (v3.1) Spisula solidissima Ensembl traces (dod: 21.02.07) Stagonospora nodorum Broad scaffolds & putative genes (assembly 1) Tetrahymena thermophila TIGR scaffolds (closed 30.09.06) & gene predictions (annotation release 31.08.06) Thalassiosira pseudonana JGI chromosomes & transcripts (v3.0) Trichoderma reesei JGI scaffolds & transcripts (v2.0) Trichomonas vaginalis TIGR scaffolds and unplaced contigs (31.03.2005) & gene predictions (15.02.2007) Trypanosoma brucei TREU927 NCBI chromosomes & CDS (Build 1.1) Trypanosoma cruzi TcruziDB(18) contigs & CDS (Release 5.1) Uncinocarpus reesii Broad scaffolds & putative genes (assembly 2) Ustilago maydis Broad scaffolds, excluded reads & putative genes (assembly 1 release 2) Volvox carteri JGI scaffolds, ESTs & transcripts (v1.0) Yarrowia lipolytica CLIB122 Genolevures Genolevures 2 Release 2: chromosomes (source date: 03.07.2004) & CDS (source date: 17.08.2006) ######################################## dod: day of download (1)http://tbestdb.bcm.umontreal.ca (2)http://www.ensembl.org (3)http://genome.wustl.edu (4)ftp://ftp.ncbi.nih.gov/pub/TraceDB (5)http://www.broad.mit.edu (6)ftp://ftp.wormbase.org/pub/wormbase (7)http://cbi.labri.fr/Genolevures (8)http://genome.jgi-psf.org (ftp) (9)http://merolae.biol.s.u-tokyo.ac.jp (10)http://www.sanger.ac.uk (11)http://genomics.msu.edu/fruitdb (12)http://www.tigr.org (13)http://rapdb.lab.nig.ac.jp (14)http://cigbrowser.berkeley.edu/oscarella/ (15)http://www.genoscope.cns.fr (16)ftp://ftp.genome.clemson.edu/pub (17)http://genome-www.stanford.edu (18)http://tcruzidb.org/tcruzidb