Publications - Supplemental material

Please find below supplemental material corresponding to publications of our group. Currently, we list 119 supplements. If you have problems accessing electronic information, please let us know:

©NOTICE: All documents are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

  • 2018 (2 supplements)
  • 2017 (4 supplements)
  • 2016 (4 supplements)
  • 2015 (5 supplements)
  • 2014 (3 supplements)
  • 2013 (4 supplements)
  • 2012 (13 supplements)
  • 2011 (6 supplements)
  • 2010 (8 supplements)
  • 2009 (21 supplements)
  • 2008 (9 supplements)
  • 2007 (17 supplements)
  • 2006 (4 supplements)
  • 2005 (8 supplements)
  • 2004 (6 supplements)
  • 2003 (5 supplements)
  • external (Supplemental material that we host for cooperating groups)
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Bioinformatics supplemental material 2009

BIOINF 09-050: Genomic Organization of Eukaryotic tRNAs

Clara Bermudez-Santana, Camille Stephan-Otto Attolini, Toralf Kirsten, Jan Engelhardt, Sonja J. Prohaska, Stephan Steigele, Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-049: Mitochondrial genome evolution in Ophiuroidea, Echinoidea, and Holothuroidea: Insights in phylogenetic relationships of Echinodermata

Marleen Perseke, Detlef Bernhard, Guido Fritzsch, Franz Brümmer, Peter F Stadler, Martin Schlegel
[ Supplemental Material ]

BIOINF 09-041: A novel family of plasmid-transferred anti-sense ncRNAs

Sven Findeiß, Cornelius Schmidtke, Peter F. Stadler ,and Ulla Bonas
[ Supplemental Material ]

BIOINF 09-040: Hox clusters of the bichir (Actinopterygii, Polypterus senegalus) highlight unique patterns of sequence evolution in gnathostome phylogeny

Jeremy D. Raincrow, Ken Dewar, Li-Zhi Gao, Claudia Stocsits, Sonja J. Prohaska, Ken Dewar, Chris T. Amemiya, Peter F. Stadler, Chi-hua Chiu
[ Supplemental Material ]

BIOINF 09-036: Some novel intron positions in conserved Drosophila genes are caused by intron sliding or tandem duplication

Jörg Lehmann, Carina Eisenhardt, Peter F. Stadler, Veiko Krauss
[ Supplemental Material ]

BIOINF 09-031: Efficient exploration of discrete energy landscapes

Martin Mann, Konstantin Klemm
[ Supplemental Material ]

BIOINF 09-028: MITOS: Improved <i>de novo</i> Metazoan Mitochondrial Genome Annotation

Matthias Bernt, Alexander Donath, Frank Jühling, Fabian Externbrink, Catherine Florentz, Guido Fritzsch, Joern Pütz, Martin Middendorf, and Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-026: RNAz 2.0: improved noncoding RNA detection

Andreas R. Gruber, Sven Findeiß, Stefan Washietl, Ivo L. Hofacker and Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-023: RNase MRP and RNase P

at least Manuela Marz, Astrid Schoen, Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-021: Comparative Analysis of Eukaryotic U3 snoRNA

Manja Marz, Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-020: Nematode sbRNAs: homologs of vertebrate Y RNAs

Ilenia Boria, Andreas R. Gruber, Andrea Tanzer, Stephan Bernhart, Ronny Lorenz, Michael M. Mueller, Ivo L. Hofacker, Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-017: Converting DNA to Music: ComposAlign

Todd Ingalls, Georg Martius, Marc Hellmuth, Manja Marz, Sonja J. Prohaska
[ Supplemental Material ]

BIOINF 09-016: Solvent exposure imparts similar selective pressures across a range of yeast proteins.

Gavin C. Conant, Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-015: Evidence for Human microRNA-Offset RNAs in Small RNA Sequencing Data

David Langenberger, Clara Bermudez-Santana, Jana Hertel, Philipp Khaitovich, Steve Hoffmann, Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-012: Customized strategies for discovering distant ncRNA homologs

Axel Mosig, Liang Zhu, Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-010: Evolution of 7SK RNA and Its Protein Partners in Metazoa

Manja Marz*, Alexander Donath*, Nina Verstraete, Van Trung Nguyen, Peter F. Stadler, Olivier Bensaude
[ Supplemental Material ]

BIOINF 09-009: Temperature-Dependent Structural Variability of RNAs: Spliced Leader RNAs and their Evolutionary History

Manja Marz, Nathalie Vanzo, Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-008: Partition Function and Base Pairing Probabilities for RNA-RNA Interaction Prediction

Fenix W. D. Huang, Jin Qin, Christian M. Reidys, Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-006: Accurate and efficient reconstruction of deep phylogenies from structured RNAs

Roman R. Stocsits, Harald Letsch, Jana Hertel, Bernhard Misof , Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-002: Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome

Chris T. Amemiya, Thomas P. Powers, Sonja J. Prohaska, Jane Grimwood, Jeremy Schmutz, Mark Dickson, Tsutomu Miyake, Michael A. Schoenborn, Richard M. Myers, Francis H. Ruddle, Peter F. Stadler
[ Supplemental Material ]

BIOINF 09-001: A survey of nematode SmY RNAs

Thomas A. Jones, Wolfgang Otto, Manja Marz, Sean R. Eddy, Peter F. Stadler
[ Supplemental Material ]