Publications - Supplemental material

Please find below supplemental material corresponding to publications of our group. Currently, we list 116 supplements. If you have problems accessing electronic information, please let us know:

©NOTICE: All documents are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

  • 2017 (3 supplements)
  • 2016 (4 supplements)
  • 2015 (5 supplements)
  • 2014 (3 supplements)
  • 2013 (4 supplements)
  • 2012 (13 supplements)
  • 2011 (6 supplements)
  • 2010 (8 supplements)
  • 2009 (21 supplements)
  • 2008 (9 supplements)
  • 2007 (17 supplements)
  • 2006 (4 supplements)
  • 2005 (8 supplements)
  • 2004 (6 supplements)
  • 2003 (5 supplements)
  • external (Supplemental material that we host for cooperating groups)
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Bioinformatics supplemental material 2007

BIOINF 07-029: The Amphioxus Hox Cluster: Characterization, Comparative Genomics, and Evolution

Chris T. Amemiya, Sonja J. Prohaska, Alicia Hill-Force, April Cooke, Jessica Wasserscheid, David E. K. Ferrier, Juan Pacual Anaya, Jordi Garcia-Fernàndez, Ken Dewar, Peter F. Stadler
[ Supplemental Material ]

BIOINF 07-028: Folding Kinetics of Large RNAs

Michael Geis, Christoph Flamm, Michael T. Wolfinger, Ivo L. Hofacker, Martin Middendorf, Christian Mandl, Peter F. Stadler, Caroline Thurner
[ Supplemental Material ]

BIOINF 07-025: Size Variation and Structural Conservation of Vertebrate Telomerase RNA

Mingyi Xie, Axel Mosig, Xiaodong Qi, Yang Li, Peter F. Stadler, Julian J.-L. Chen
[ Supplemental Material ]

BIOINF 07-024: Duplicated RNA Genes in Teleost Fish Genomes

Dominic Rose, Julian Jöris, Jörg Hackermüller, Kristin Reiche, Qiang LI, Peter F. Stadler
[ Supplemental Material ]

BIOINF 07-023: Identification of small non-coding RNAs in <i>Pseudomonas aeruginosa</i> using RNomics and bioinformatic tools

Elisabeth Sonnleitner, Theresa Sorger-Domenigg, Monika J. Madej, Sven Findeiß, Jörg Hackermüller, Alexander Hüttenhofer, Peter Stadler, Udo Bläsi and Isabella Moll
[ Supplemental Material ]

BIOINF 07-021: Invertebrate 7SK snRNAs

Andreas R. Gruber, Dorota Koper-Emde, Manja Marz, Hakim Tafer, Stephan Bernhart, Gregor Obernosterer, Axel Mosig, Ivo L.Hofacker, Peter F. Stadler, Bernd-Joachim Benecke
[ Supplemental Material ]

BIOINF 07-019: RNA maps reveal new RNA classes and a possible function for pervasive transcription

Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermüller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, Helt G, Ganesh M, Ghosh S, Piccolboni A, Sementchenko V, Tammana H, Gingeras TR.
[ Supplemental Material ]

BIOINF 07-017: Evolution of Mitochondrial Gene Orders in Echinoderms

Marleen Perseke, Guido Fritzsch, Kai Ramsch, Matthias Bernt, Daniel Merkle, Martin Middendorf, Detlef Bernhard, Peter Stadler, Martin Schlegel
[ Supplemental Material ]

BIOINF 07-015: <tt>SnoReport</tt>: Computational identification of snoRNAs with unknown targets

Jana Hertel, Ivo L. Hofacker, Peter F. Stadler
[ Supplemental Material ]

BIOINF 07-012: PCR Survey of <i>Xenoturbella bocki</i> Hox Genes

Guido Fritzsch, Manja U. Böhme, Mike Thorndyke, Hiroaki Nakano, Olle Israelsson, Thomas Stach, Martin Schlegel, Thomas Hankeln, Thomas Stach, Peter F. Stadler
[ Supplemental Material ]

BIOINF 07-011: Homology Search with Fragmented Nucleic Acid Sequence Patterns

Axel Mosig, Julian L. Chen, Peter F. Stadler
[ Supplemental Material ]

BIOINF 07-010: U7 snRNAs: A Computational Survey

Manja Marz, Axel Mosig, Bärbel M. R. Stadler, Peter F. Stadler
[ Supplemental Material ]

BIOINF 07-009: The Mitochondrial DNA of Xenoturbella bocki: Genomic Architecture and Phylogenetic Analysis

Marlen Perseke, Thomas Hankeln, Bettina Weich, Guido Fritzsch, Peter F. Stadler, Olle Israelson, Detlef Bernhard, Martin Schlegel
[ Supplemental Material ]

BIOINF 07-008: The complete mitochondrial genome of the Green Lizard Lacerta viridis viridis (Reptilia: Lacertidae) phylogenetic implications and intraspecific variability

M. U. Böhme, G. Fritzsch, A. Tippmann, M Schlegel, T. U. Berendonk
[ Supplemental Material ]

BIOINF 07-007: <tt>NcDNAlign</tt>: Plausible Multiple Alignments of Non-Protein-Coding Genomic Sequences

Dominic Rose, Jana Hertel, Kristin Reiche, Jörg Hackermüller, Peter F. Stadler
[ Supplemental Material ]

BIOINF 07-004: Evolution of the Vertebrate Y RNA Cluster

Axel Mosig, Meng Guofeng, Bärbel M. R. Stadler, Peter F. Stadler
[ Supplemental Material ]

BIOINF 07-001: Computational RNomics of Drosophilids

Dominic Rose, Jörg Hackermüller, Stefan Washietl, Sven Findeiß, Kristin Reiche, Jana Hertel, Peter F. Stadler, Sonja J. Prohaska
[ Supplemental Material ]