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BIOINF 12-022: Matching of Soulmates: Coevolution of SnoRNAs and Their Targets

Stephanie Kehr, Sebastian Bartschat, Hakim Tafer, Peter F. Stadler, Jana Hertel


S1: Conservation of Interactions with Known Modifications

  1. Methylations in 18S rRNA: [jpg] [eps]
  2. Pseudouridylations in 18S rRNA: [jpg] [eps]
  3. Methylations in 28S rRNA: [jpg] [eps]
  4. Pseudouridylations in 28S rRNA: [jpg] [eps]
  5. Pseudouridylations and Methylations in 5.8S rRNA: [jpg] [eps]
  6. Pseudouridylations and Methylations in snRNAs: [jpg] [eps]

S2: Expression of Hostgenes of Redundant SnoRNA Guides

  1. Table with Hostgene Expression [html] [csv]

S3: SnoRNA Family Alignments and Their Interactions

  1. Table with box H/ACA snoRNAs [html] [csv] [xls]
  2. Table with box C/D snoRNAs [html] [csv] [xls]

S4: Predictions for Orphan Modifications and Orphan SnoRNAs

  1. Predictions for orphan modifications
    1. Table [html], [csv]
    2. Conservation of putative Interactions with 18S rRNA [jpg] [eps]
    3. Conservation of putative Interactions with 28S rRNA [jpg] [eps]
    4. Conservation of putative Interactions with U2 snRNA [jpg] [eps]
  2. Predictions for orphan snoRNAs
    1. Table [html], [csv]
    2. Conservation of putative Interactions with 18S rRNA [jpg] [eps]
    3. Conservation of putative Interactions with 28S rRNA [jpg] [eps]

S5: Pylogenetic Tree of vertebrates

  1. Pylogenetic tree of 47 investigated vertebrates: [jpg] [eps]

S6: RNAsalsa alignments of ribosomal RNAs

  1. vertebrate 18S rRNA alignment: [aln]
  2. vertebrate 28S rRNA alignment: [aln]
  3. vertebrate 5.8S rRNA alignment: [aln]
  4. mapping between alignment columns and human modified positions: [html] [csv]

S7: Parameters used for target prediction programs

  1. parameters: [html]

Stephanie Kehr, 26 Aug 2013