Publications - Published papers

Please find below publications of our group. Currently, we list 454 papers. Some of the publications are in collaboration with the group of Sonja Prohaska and are also listed in the publication list for her individual group. Access to published papers (access) is restricted to our local network and chosen collaborators. If you have problems accessing electronic information, please let us know:

©NOTICE: All papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

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Publications of the bioinformatics group 2016

A Bibliometric Profile of MATCH Communications in Mathematical and in Computer Chemistry

Restrepo, Guillermo and Willett, Peter
MATCH Communications in Mathematical and in Computer Chemistry undefined: undefined
PREPRINT 17-008:
[ Publishers's page ]

Lemont B. Kier: Art, Science and Green Cheese.

Restrepo, Guillermo
Current computer-aided drug design 12: 314
PREPRINT 17-007:
[ Publishers's page ]

Assessing greenness of chemical reactions and synthesis plans through posetic landscapes

Restrepo, Guillermo and Stadler, Peter F
ACS Sustainable Chemistry \& Engineering 4: 2191--2199
PREPRINT 17-006:
[ Publishers's page ]

How frequently do clusters occur in hierarchical clustering analysis? A graph theoretical approach to studying ties in proximity

Leal, Wilmer and Llanos, Eugenio J and Restrepo, Guillermo and Suárez, Carlos F and Patarroyo, Manuel Elkin
Journal of cheminformatics 8: 4
PREPRINT 17-005:
[ Publishers's page ]

A consensus network of gene regulatory factors in the human frontal lobe

Berto, Stefano and Perdomo-Sabogal, Alvaro and Gerighausen, Daniel and Qin, Jing and Nowick, Katja
Frontiers in genetics 2016; 7: 31.
PREPRINT 16-020: [ Abstract ]
[ Publishers's page ]

Analyzing Histone Modifications in iPS Cells Using Tiled Binned 3D Scatter Plots

Dirk Zeckzer, and Daniel Gerighausen, and Lydia Müller,
International Symposium on Big Data Visual Analytics 2016
PREPRINT 16-019:

Sound--meaning association biases evidenced across thousands of languages

Blasi, Damián E and Wichmann, S\oren and Hammarström, Harald and Stadler, Peter F and Christiansen, Morten H
Proceedings of the National Academy of Sciences undefined: 201605782
PREPRINT 16-017:   [ PDF ]
[ Publishers's page ]

Sierra platinum: a fast and robust peak-caller for replicated ChIP-seq experiments with visual quality-control and-steering

Müller, Lydia and Gerighausen, Daniel and Farman, Mariam and Zeckzer, Dirk
BMC Bioinformatics 17: 377
PREPRINT 16-016: [ Abstract ]
[ Publishers's page ]

Spectral classes of regular, random, and empirical graphs

Gu, Jiao and Jost, Jürgen and Liu, Shiping and Stadler, Peter F
Linear Algebra and its Applications 489: 30--49
PREPRINT 16-013:
[ Publishers's page ]

The paralog-to-contig assignment problem: high quality gene models from fragmented assemblies

Indrischek, Henrike and Wieseke, Nicolas and Stadler, Peter F and Prohaska, Sonja J
Algorithms for Molecular Biology 11: 1
PREPRINT 16-002: [ Abstract ]
[ Publishers's page ]

An updated human snoRNAome

Hadi Jorjani,*, Stephanie Kehr,*, Dominik J. Jedlinski, Rafal Gumienny, Jana Hertel, Peter F. Stadler, Mihaela Zavolan, Andreas R. Gruber
Nucl. Acids Res. (20 June 2016) 44 (11): 5068-5082.
PREPRINT 15-065: [ Abstract ]  [ Supplement ]
[ Publishers's page ]

U6 snRNA Intron Insertion Occurred Multiple Times During Fungi Evolution

Sebastian Canzler, Jana Hertel, Peter F. Stadler
RNA biology 13.2 (2016): 119-127
PREPRINT 15-046: [ Abstract ]  [ PDF ]  [ Supplement ]
[ Publishers's page ]