Publications - Published papers

Please find below publications of our group. Currently, we list 454 papers. Some of the publications are in collaboration with the group of Sonja Prohaska and are also listed in the publication list for her individual group. Access to published papers (access) is restricted to our local network and chosen collaborators. If you have problems accessing electronic information, please let us know:

©NOTICE: All papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

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Publications of the bioinformatics group 2003

On the Evolution of Primitive Genetic Codes

G. Weberndorfer, I.L. Hofacker, P.F. Stadler
Orig. Life Evol. Biosph. 33: 491-514 (2003)
PREPRINT 03-036:
[ Publishers's page ]  paperID

Circuit Bases of Strongly Connected Graphs

Petra M. Gleiss, Josef Leydold and Peter F. Stadler
Discussiones Math. Graph Th. 23: 241-260 (2003).
PREPRINT 03-035:   [ PDF ]  [ PS ]
[ Publishers's page ]

Minimum Cycle Bases of Halin Graphs

Peter F. Stadler
J. Graph Th. 43: 150-155 (2003)
PREPRINT 03-034: [ Abstract ]  [ PS ]
[ Publishers's page ]  paperID

Quasi-Independence, Homology and the Unity of Type: A Topological Theory of Characters

G.P. Wagner, P.F. Stadler
J. Theor. Biol. 220: 505-527 (2003)
PREPRINT 03-033: [ Abstract ]  [ PDF ]  [ PS ]
[ Publishers's page ]  paperID

Design of Multi-Stable Nucleic Acid Sequences

Ingrid Abfalter, Christoph Flamm, Peter F. Stadler
Proceedings of the German Conference on Bioinformatics. Volume I. H.-W. Mewes, V. Heun, D. Frishman, S. Kramer (Eds.), belleville Verlag Michael Farin, München, 2003, p.1-7.
PREPRINT 03-018: [ Abstract ]  [ PDF ]  [ PS ]

<tt>litsift</tt>: Automated Text Categorization in Bibliographic Search

Lukas C. Faulstich, Peter F. Stadler, Caroline Thurner, Christina Witwer
In: Data Mining and Text Mining for Bioinformatics [Proceedings of the European Workshop Held in Conjunction with ECML / PKDD- 2003 in Dubrovnik, Croatia 22 September, 2003], Tobias Scheffer Ulf Leser (eds.), Humboldt Univ., Berlin, 2003, pp. 20-25.
PREPRINT 03-014: [ Abstract ]  [ PDF ]  [ PS ]
[ Publishers's page ]

Independent Hox-Cluster Duplications in Lampreys

Claudia Fried, Sonja J. Prohaska,, Peter F. Stadler
J.Exp.Zool., Mol. Devel. Evol. 299B: 18-25 (2003)
PREPRINT 03-011: [ Abstract ]  [ PDF ]  [ PS ]
[ Publishers's page ]  paperID

Generic Properties of Chemical Networks: Artificial Chemistry Based on Graph Rewriting

Gil Benkö, Christoph Flamm, Peter F. Stadler
Advances in Artificial Life, W. Banzhaf, T. Christaller, T. P. Dittrich, J.T. and Kim, J. and Ziegler (eds.), Springer-Verlag Heidelberg, Germany (2003), Lecture Notes in Computer Science vol. 2801, pp 10-20
PREPRINT 03-006: [ Abstract ]  [ PDF ]  [ PS ]
[ Publishers's page ]  paperID

Morphological Modularity and Macroevolution: Conceptual and Empirical Aspects

Gunther J. Eble
W. Callebut and D. Rasskin-Gutman, eds. Modularity: understanding the development and evolution of natural complex systems. MIT Press, Boston, MA. Pp. 221-238 (2003)
PREPRINT 03-004: [ Abstract ]  [ PDF ]

Phase transition and landscape statistics of the number partitioning problem

Peter F. Stadler, Wim Hordijk, José F. Fontanari
Phys.Rev.E 67: 056701 (2003)
PREPRINT 03-001: [ Abstract ]  [ PDF ]  [ PS ]
[ Publishers's page ]  paperID

Barrier Trees on Poset-Valued Landscapes

P.F. Stadler, Ch. Flamm
Genet. Prog. Evolv. Mach., 4: 7-20 (2003)
PREPRINT 02-009:
[ Publishers's page ]  paperID

Shapes of tree representations of spin-glass landscapes

Wim Hordijk, José F. Fontanari, Peter F. Stadler
J.Phys.A:Math.Gen. 36: 3671-3681 (2003)
PREPRINT 02-007: [ Abstract ]  [ PDF ]  [ PS ]
[ Publishers's page ]  paperID

Landscapes and Effective Fitness

Peter F. Stadler, Christopher R. Stephens
Comments Theor. Biol. 8: 389-431 (2003)
PREPRINT 02-006: [ Abstract ]  [ PDF ]  [ PS ]
[ Publishers's page ]

Centers of Complex Networks

Stefan Wuchty, Peter F. Stadler
J.Theor.Biol. 223: 45-53 (2003)
PREPRINT 02-004: [ Abstract ]  [ PDF ]  [ PS ]
[ Publishers's page ]  paperID

Molecular Replicator Dynamics

Bärbel M. R. Stadler, Peter F. Stadler
Adv. Complex Systems, 6: 47-77 (2003)
PREPRINT 02-003: [ Abstract ]  [ PDF ]  [ PS ]
[ Publishers's page ]  paperID

A Graph-Based Toy Model of Chemistry

Gil Benkö, Christoph Flamm, Peter F. Stadler
J. Chem. Inf. Comput. Sci. 43: 1085-1093 (2003)
PREPRINT 02-001: [ Abstract ]  [ PDF ]  [ PS ]
[ Publishers's page ]  paperID