Publications - PhD/MSc/BSc/Diploma theses
Please find below various PhD, MSc, BSc and Diploma theses produced by our group.
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PhD theses written at University of Leipzig
Linguistic Diversity Through Data
Damian Blasi (University of Leipzig, 2017)
Sequences Signature and Genome Rearrangements in Mitogenomes
Marwa Al Arab (University of Leipzig, 2017)
Methods for DNA Methylation Sequencing Analysis and their Application on Cancer Data
Helene Kretzmer (University of Leipzig, 2016)
BOOLEAN FUNCTIONS AND DISCRETE DYNAMICS: Analytic and Biological Application
Haleh Ebadi (University of Leipzig, 2016)
Rhythms and Evolution: Effects of Timing on Survival
Bruno Pace (University of Leipzig, 2016)
Computational investigations into the evolution of mitochondrial genomes
Abdullah Sahyoun (University of Leipzig, 2015)
The mapping task and its various applications in next-generation sequencing
Christian Otto (University of Leipzig, 2015)
(Relaxed) Product Structures of Graphs and Hypergraphs
Lydia Ostermeier (University of Leipzig, 2015)
Transcription factor networks play a key role in human brain evolution and disorders
Stefano Berto (University of Leipzig, 2015)
Genome Informatics for High-Throughput Sequencing Data Analysis - Methods and Application
Steve Hoffmann (University of Leipzig, 2014)
The Dynamic Epigenome - Analysis of the Distribution of Histone Modifications
Lydia Steiner (University of Leipzig, 2013)
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Relative Timing of Intron Gain and a New marker for Phylogenetic Analyses
Jörg Lehmann (University of Leipzig, 2013)
High-troughput sequencing and small non-codings RNAs
David Langenberger (University of Leipzig, 2013)
The Orthology Road
Maribel Hernandez Rosales (University of Leipzig, 2013)
Stochastic Tree Models for Macroevolution
Stephanie Keller-Schmidt (University of Leipzig, 2012)
Analysis of large-scale molecular biological data using self-organizing maps
Henry Wirth (University of Leipzig, 2012)
Evolutionary Analysis of the Protein Domain Distribution in Eukaryotes
Arli Aditya Parikesit (University of Leipzig, 2012)
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Perturbations in Boolean Networks
Fakhteh Ghanbarnejad (University of Leipzig, 2012)
Computational Studies on the Evolution of Metabolism
Alexander Ullrich (University of Leipzig, 2011)
Molecular Morphology
Alexander Donath (University of Leipzig, 2011)
Transcriptional Regulatory Elements
Wolfgang Otto (University of Leipzig, 2011)
The long and the short of computational ncRNA prediction
Dominic Rose (University of Leipzig, 2010)
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Local Prime Factor Decomposition of Approximate Strong Product Graphs
Marc Hellmuth (University of Leipzig, 2010)
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Strategies for Homology-Based Identification of Eukaryotic Non-Coding RNA Genes
Manuela Marz (University of Leipzig, 2009)
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Structured non-coding RNAs
Jana Hertel (University of Leipzig, 2009)
PhD theses prepared in Leipzig for other institutions
MSc theses written at University of Leipzig
Screening of Prostate Cancer Tissue - Samples for Gene Fusions in a Custom Assembly
Carolin Schimmelpfennig (University of Leipzig, 2017)
Partition function algorithm applied to prediction of paralog evolution
Gabor Balogh (University of Leipzig, 2017)
SOM portrayal of the blood transcriptome
Maria Schmidt (University of Leipzig, 2017)
Host prediction in RNA viruses
Adrian Viehweger (University of Leipzig, 2017)
Planares Zeichnen von RNA-Sekundärstrulturen
Daniel Alexander (University of Leipzig, 2017)
NGS Data Analysis within the Scope of Molecular Diagnostics
Alexander Scholz (University of Leipzig, 2017)
Folding Kinetics of Riboswitches
Felix Kühnl (University of Leipzig, 2016)
Differential integration of genes involved in cognitive disorders into co-expression networks of human brains
Janine Rauch (University of Leipzig, 2016)
Population Structure in Aboriginal Australiens - a genetic perspective on uniparental markers
Enrico Macholdt (University of Leipzig, 2016)
Using dynamic modeling to infer microbial interaction networks from flow cytometry data
Lukas Hirsch (University of Leipzig, 2016)
The genetic relationship between modern and archaic humans
Steffi Grothe (University of Leipzig, 2016)
Strukturelle Analyse von Transkriptions-intermediaten synthetischer Riboswitches
Frauke Olthoff (University of Leipzig, 2016)
Evolution of DNA methyltranferases in Neotera
Oliver Scheer (University of Leipzig, 2016)
Analyse von artifiziellen Substraten für die tRNA-Nukleotidyltransferase
Lisa Duchstein (University of Leipzig, 2015)
Processed Small RNAs in Archaea and BHB Elements
Sarah Berkemer (University of Leipzig, 2015)
Alignment of Words
Nancy Retzlaff (University of Leipzig, 2015)
Hidden Treasures in unspliced EST data
Jan Engelhardt (University of Leipzig, 2014)
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Role of random monoallelically expressed genes in the development of Alzheimer's disease
Kanton, Sabina (University of Leipzig, 2014)
Evolutionärer Vergleich von Bindungsstellen des KAP1 bei Mensch und Schimpanse
Sandra Gerstl (University of Leipzig, 2014)
A Lagranian Particle Approach to fluid image warping and image registration
Christian Ludborz (University of Leipzig, 2014)
Functional characterization of ZNF542 and ZEB2 in primates
Lisa Falkowski (University of Leipzig, 2014)
Oriented Graph Grammers and Stereochemistry
Fabian Externbrink (University of Leipzig, 2014)
TiBi-3D a Guide through the World of Epigenetics
Daniel Gerighausen (University of Leipzig, 2014)
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RNA structure prediction of PKR activators
Tobias Mede (University of Leipzig, 2013)
Comparative Transcriptomics of Long Non-Coding RNAs
Anne Nitsche (University of Leipzig, 2012)
A homolgy based annotation pipeline for small nucleolar RNAs in Deuterostomia
Sebastian Bartschat (University of Leipzig, 2011)
Ultra-Conserved Regions Analyzing the Tip of the Iceberg
Sven Findeiß (University of Leipzig, 2008)
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Detection of Orthologs and Paralogs from Local Syntenic Blocks
Jörg Lehmann (University of Leipzig, 2007)
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Tracing the TIRs - Expanding the repertoire of known TIR domain containing proteins
Alexander Donath (University of Leipzig, 2007)
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Evolution of Spliceeosomal RNAs in Metazoan Animals
Manuela Lindemeyer (University of Leipzig, 2006)
Noncoding RNA Detection Using Comperative Genomics
Dominic Rose (University of Leipzig, 2006)
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Detection of conserves non-coding RNAs in the pig EST data and related mammals
Stefan Seemann (University of Leipzig, 2006)
BBQ in Tanimoto Scores: Novel Scoring Schemes for cis-Regulatory Module Discovery
Peter Menzel (University of Leipzig, 2006)
[ Details ]
MicroRNA Detection using Comparative Genomics
Jana Hertel (University of Leipzig, 2005)
MSc theses prepared in Leipzig for other institutions
In silico Analysis of Canine and Feline Parvovirus Evolution
Jennifer Hetzel (University of Vienna, 2004)
Molekulare Evolution der Vertebraten snoRNAs
Bettina Müller (FH Weihenstephan, 2004)
Genomic Surveys for RNA Genes
Andrea Tanzer (University of Vienna, 2004)
Picking Up the Trail of Phylogenetic Footprints: The Story of Tracker and Its First Tracings
Sonja J. Prohaska (University of Vienna, 2004)
Discovery of Transcription Factor Binding Sites
Claudia Fried (University of Vienna, 2004)
BSc theses written at University of Leipzig
Training and evaluation of a support vector regression model for standardized RNA folding energies
Siegfried Zötzsche (University of Leipzig, 2017)
Cliquen in Co-Graphen
Marius Brunnert (University of Leipzig, 2015)
orthoDeprime: A Tool for Heuristic Cograph Editing on Estimated Ortholgy Graphs
Felix Kühnl (University of Leipzig, 2014)
BSc theses prepared in Leipzig for other institutions
Diploma theses written at University of Leipzig
Clustering and phylogenetic analysis of food recipes
Peter Binder (University of Leipzig, 2015)