Publications - Supplemental material
Please find below supplemental material corresponding to publications of our group. Currently, we list 132 supplements.
If you have problems accessing electronic information, please let us know:
You may use this URL to cite or link to us.
©NOTICE: All documents are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.
This supplement is also available at http://www.bioinf.uni-leipzig.de/publications/supplements/08-024You may use this URL to cite or link to us.
BIOINF 08-024: Non-Coding RNA Annotation of the Genome of <em>Trichoplax adhaerens</em>
Jana Hertel, Danielle de Jong, Manja Marz, Dominic Rose, Hakim Tafer, Andrea Tanzer, Bernd Schierwater, Peter F. Stadler
GotohScan-1.3.tar.gz | README
Published Release (January 16, 2009):
GotohScan-1.2.tar.gz
Annotation files
- Multiz/RNAz screen (1416 loci)
[BED] [FASTA] - NcDNAlign/RNAz screen
[BED] [FASTA] - ncRNAs identified by homology search
[BED] [FASTA]
Small Nuclear RNA files
- Spliceosomal RNAs
FASTA U1 U2 U4 U5 U6 U11 U12 U4atac U6atac STOCKHOLM U1 U2 U4 U5 U6 U11 U12 U4atac U6atac - RNase MRP RNA
[FASTA] - RNase P RNA
[FASTA] - SRP RNA
[FASTA]
Small Nucleolar RNA files
MicroRNA-like hairpins
Novel ncRNA
- novel H/ACA box snoRNA candidate on scaffold 3857
- removed novel H/ACA box snoRNA candidate on scaffold 4365
Software
Problem solved that occured when ALL database sequences were shorter than query (March 5, 2009):GotohScan-1.3.tar.gz | README
Published Release (January 16, 2009):
GotohScan-1.2.tar.gz