Publications - Supplemental material

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BIOINF 07-007: <tt>NcDNAlign</tt>: Plausible Multiple Alignments of Non-Protein-Coding Genomic Sequences

Dominic Rose, Jana Hertel, Kristin Reiche, Jörg Hackermüller, Peter F. Stadler


Example application 1: Ultra-conserved regions (UCRs) in nematodes

We identified 530 UCRs and 4,479 CNEs, all coordinates resp. sequences refer to Caenorhabditis elegans.

Example application 2: Ultra-conserved regions (UCRs) in teleosts

We identified 2,377 UCRs, all coordinates resp. sequences refer to Takifugu rubripes.

Example application 3: Prediction of novel structured non-coding RNAs in gammaproteobacterial genomes

Further supplementary tables and figures: PDF

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