Publications - Supplemental material

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BIOINF 06-013: Identification of Homoplastic Characters in Multiple Sequence Alignments

Andreas W. M. Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J. Prohaska and Peter F. Stadler

  • SOFTWARE: Noisy-1.5.7
  • Accession Numbers of the sequences used in this study.
  • Examples

  • Arthropoda.fas: Clustal X alignment of the nucleotide sequences of arthropods mitochondrial protein coding genes
  • Arthropoda_out.fas:Output file of the program noisy with cutoff 0.8 - nucleotide sequences of arthropods mitochondrial protein coding genes
  • Arthropoda_sta.gr: Statistics of the alignment and the output of the program noisy - nucleotide sequences of arthropods mitochondrial protein coding genes
  • Arthropoda_typ.eps: Graphic of the distribution of homoplastic sites for arthropods example
  • Squamata.fas: Clustal X alignment of the nucleotide sequences of Squamata mitochondrial protein coding genes
  • Squamata_out.fas:Output file of the program noisy with cutoff 0.8 - nucleotide sequences of Squamata mitochondrial protein coding genes
  • Squamata_sta.gr: Statistics of the alignment and the output of the program noisy - nucleotide sequences of Squamata mitochondrial protein coding genes
  • Squamata_typ.eps: Graphic of the distribution of homoplastic sites for Squamata example
  • Frogs.fas: Clustal X alignment of the part of nucleotide sequences (12Sr RNA to 16Sr RNA) of frogs
  • Frogs_out.fas:Output file of the program noisy with cutoff 0.8 - part of nucleotide sequences (12Sr RNA to 16Sr RNA) of frogs
  • Frogs_sta.gr: Statistics of the alignment and the output of the program noisy - part of nucleotide sequences (12Sr RNA to 16Sr RNA) of frogs
  • Frogs_typ.eps: Graphic of the distribution of homoplastic sites for frogs example